Factsheet for HORVU6Hr1G068660.4

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G270900.1	Wheat	cytosol	75.54	84.16
TraesCS6B01G298000.1	Wheat	cytosol	75.54	84.16
TraesCS6D01G244200.1	Wheat	cytosol	75.21	83.79
HORVU6Hr1G041610.18	Barley	plastid	100.0	80.67
Os02t0702600-02	Rice	cytosol	68.26	76.06
KXG30927	Sorghum	cytosol	65.95	73.89
Zm00001d017755_P002	Maize	cytosol	65.29	73.01
Zm00001d051553_P004	Maize	cytosol	63.8	71.48
GSMUA_Achr11P...	Banana	cytosol	36.53	66.17
GSMUA_Achr8P14480_001	Banana	nucleus	27.6	64.48
CDY69871	Canola	cytosol	10.41	56.25
KRH07751	Soybean	cytosol, nucleus, plastid	42.48	46.31
CDY12411	Canola	cytosol	9.75	45.74
KRH07240	Soybean	cytosol, nucleus, plastid	41.98	45.68
KRH76428	Soybean	mitochondrion, nucleus	41.65	44.76
KRH39757	Soybean	mitochondrion, nucleus	41.65	44.76
CDX84189	Canola	cytosol	35.87	44.2
AT1G31650.1	Thale cress	mitochondrion, nucleus	41.82	43.92
Solyc08g075120.2.1	Tomato	extracellular	40.5	43.52
CDY62299	Canola	cytosol, nucleus, plastid	40.17	43.39
CDY31706	Canola	cytosol	36.03	43.34
CDY12303	Canola	nucleus	40.33	43.34
PGSC0003DMT400053650	Potato	cytosol, nucleus, plastid	40.17	43.16
Bra005323.1-P	Field mustard	nucleus	35.7	43.11
GSMUA_Achr8P14490_001	Banana	cytosol	13.55	42.71
Bra005322.1-P	Field mustard	nucleus	25.12	38.78
PGSC0003DMT400075550	Potato	extracellular	10.91	32.04
Solyc12g096220.1.1	Tomato	nucleus	37.36	31.04
HORVU1Hr1G053350.4	Barley	nucleus, plastid	24.3	30.75
HORVU6Hr1G050860.4	Barley	mitochondrion	25.29	30.42
HORVU5Hr1G085510.1	Barley	nucleus, plastid	28.43	30.39
HORVU1Hr1G072910.3	Barley	cytosol	27.93	29.96
HORVU3Hr1G073200.1	Barley	nucleus	22.98	29.2
HORVU6Hr1G092860.2	Barley	nucleus	21.49	28.45
VIT_02s0087g00460.t01	Wine grape	mitochondrion, nucleus	41.98	27.85
HORVU2Hr1G096430.13	Barley	mitochondrion	24.13	27.5
GSMUA_Achr11P...	Banana	cytosol	8.1	26.92
HORVU3Hr1G085680.2	Barley	plastid	28.26	26.19
HORVU3Hr1G062030.1	Barley	nucleus, plastid	25.12	24.48
HORVU1Hr1G086590.2	Barley	plastid	24.96	22.4

Protein Annotations

Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	MapMan:27.4.3.1	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0065009	EnsemblPlantsGene:HORVU6Hr1G068660	EnsemblPlants:HORVU6Hr1G068660.4	InterPro:IPR005512	UniProt:M0XS43	PFAM:PF03759
InterPro:PRONE_dom	PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF2	InterPro:RopGEF	TMHMM:TMhelix
UniParc:UPI0002969C23	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr6H:+:475876296..475880418

Molecular Weight (calculated)

67249.6 Da

IEP (calculated)

7.334

GRAVY (calculated)

-0.418

Length

605 amino acids

Sequence
(BLAST)

001: MRMKTLACCR RRPQDFSVDM DQEPEKVTTY NGLESCIFNS SSYDEESGVS ATTGADGCVT ADSLEDEVSS CSSSKDVDGS SFSSQCLPLS KQEEHSLYEL
101: DTLDAIHLLP VKGKNPITYT LSAADIETMK EKFAKLLLGD DVSGGARGVC AALALSNGIT NLSATIFGEL WKLEPLCEEK KIRWRKEMDW LLSPTTYMVE
201: LVPTKQNGAD GCMFEIMTPK ARSDVHVNLP ALQKLDSMLI EVLDSMVDTE YWYVESGSRS GGRGKNNGQR QTKKWWLPSP CVPEQGLSQF QRKRIVFQAK
301: LVHQILKAAK SINEQVLHQI PIPMAVMDAL PKSGRSSLGE DLYHAITTDY IPIEEIFVSL SLKTEHSVLE TMNRLEGALF AWNQRISEEK CKRSPGRHSW
401: NFMKDNSSEL EKMSACIERV ETLIQLLKSR FPNLPPTFID VVKVQYNEVT SSVVMTQQHA GETDCLLVHF SEKQRLLDGA GRGARHRGGL LEGARRGGVQ
501: HPVPGGGDHA GGRPDQEAQH AHGHPQVRPL LRRVPGGHHR DAAGPHPAVP HGPDQHGRRP LRRRRQEERG QAAHVVMRGV VALYRVMGPA AYTSCIYLLL
601: LMVHL

Best Arabidopsis Sequence Match ( AT1G31650.1 )
(BLAST)

001: MMLMRRRLAC CSREREISID FDEHEQDKMI TYYGLETCII NNQSYEEESG TSRGDGCLTD SLDDDAFSSC SSSKDASSSF SSKWLPMKND EHSCDGLNLS
101: GRSQHFDAKE KKKQGYGSSQ HFDAKEKPGY VYCHLDVEAM KEKFSKLLLG EDVTGGCKGV QVALALSNAV THLATSIFGE LWKLEPLCEE KKQKWRREMD
201: WLLSPTNYMI ELVPSKQNDA NGRSLEIMTP KARADIHMNL PALQKLDSML IETLDSMVNT EFWYSEIGSR AEGKNKSTSE SKRWWLPSPQ VPKPGLSNSG
301: RKKLLDKGKV VYQVFKATKA INENILLEMP VPIVIKEAIP KSGKNSLGDE LYKMLAVESA TVDEIFISLN LGTEHAALET VNKLESAMFA WKERITEQGS
401: NGKSPVRASW SFAKDPLSEI GRNESLLNRA EALRTQIKSK HPNLPHSFLD ATKIQYDKDI GHAVLEAYSR TLANLAFRIL SRMGEILKED SLSNPNSPAP
501: PSCFPSSRDP YRTPERPLLS SRVRHSLTDD MNKADGTETG LDFLFADAKA SNSVNTTPSR SSRLWCLSKV PSDTSP

Arabidopsis Description

ROPGEF14Rop guanine nucleotide exchange factor 14 [Source:UniProtKB/Swiss-Prot;Acc:Q56WM6]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.