Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G270900.1 | Wheat | cytosol | 99.08 | 99.08 |
| TraesCS6B01G298000.1 | Wheat | cytosol | 98.71 | 98.71 |
| Os02t0702600-02 | Rice | cytosol | 87.11 | 87.11 |
| KXG30927 | Sorghum | cytosol | 85.82 | 86.3 |
| Zm00001d017755_P002 | Maize | cytosol | 84.53 | 84.84 |
| Zm00001d051553_P004 | Maize | cytosol | 83.06 | 83.52 |
| HORVU6Hr1G068660.4 | Barley | nucleus | 83.79 | 75.21 |
| GSMUA_Achr11P... | Banana | cytosol | 40.7 | 66.17 |
| GSMUA_Achr8P14480_001 | Banana | nucleus | 30.94 | 64.86 |
| HORVU6Hr1G041610.18 | Barley | plastid | 83.79 | 60.67 |
| CDY69871 | Canola | cytosol | 11.79 | 57.14 |
| GSMUA_Achr8P14490_001 | Banana | cytosol | 18.97 | 53.65 |
| GSMUA_Achr11P... | Banana | cytosol | 17.13 | 51.1 |
| KRH07751 | Soybean | cytosol, nucleus, plastid | 51.75 | 50.63 |
| KRH07240 | Soybean | cytosol, nucleus, plastid | 51.01 | 49.82 |
| CDX84189 | Canola | cytosol | 44.2 | 48.88 |
| CDY12411 | Canola | cytosol | 11.6 | 48.84 |
| KRH39757 | Soybean | mitochondrion, nucleus | 50.46 | 48.67 |
| KRH76428 | Soybean | mitochondrion, nucleus | 50.28 | 48.49 |
| CDY31706 | Canola | cytosol | 44.38 | 47.91 |
| Bra005323.1-P | Field mustard | nucleus | 44.01 | 47.7 |
| AT1G31650.1 | Thale cress | mitochondrion, nucleus | 50.28 | 47.4 |
| Solyc08g075120.2.1 | Tomato | extracellular | 48.8 | 47.07 |
| CDY12303 | Canola | nucleus | 48.43 | 46.71 |
| PGSC0003DMT400053650 | Potato | cytosol, nucleus, plastid | 48.43 | 46.71 |
| CDY62299 | Canola | cytosol, nucleus, plastid | 48.07 | 46.61 |
| Bra005322.1-P | Field mustard | nucleus | 32.04 | 44.39 |
| PGSC0003DMT400075550 | Potato | extracellular | 15.47 | 40.78 |
| TraesCS5D01G346100.1 | Wheat | cytosol | 31.86 | 35.74 |
| TraesCS3D01G357800.1 | Wheat | cytosol | 33.7 | 34.01 |
| TraesCS1D01G211900.1 | Wheat | nucleus | 29.65 | 33.75 |
| Solyc12g096220.1.1 | Tomato | nucleus | 44.38 | 33.1 |
| TraesCS3D01G296400.1 | Wheat | cytosol | 27.99 | 32.9 |
| TraesCS2D01G405400.1 | Wheat | nucleus | 28.36 | 32.77 |
| TraesCS6D01G183300.1 | Wheat | mitochondrion | 30.2 | 32.22 |
| TraesCS1D01G280000.1 | Wheat | cytosol | 32.6 | 31.66 |
| TraesCS6D01G388300.1 | Wheat | nucleus | 26.89 | 31.26 |
| TraesCS3D01G270200.1 | Wheat | plastid | 29.28 | 30.7 |
| VIT_02s0087g00460.t01 | Wine grape | mitochondrion, nucleus | 50.64 | 30.15 |
| TraesCS1D01G400200.2 | Wheat | plastid | 29.28 | 28.14 |
Protein Annotations
| Gene3D:1.20.58.2010 | MapMan:27.4.3.1 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005089 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009856 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0016049 | GO:GO:0030154 | GO:GO:0040007 | GO:GO:0080092 | InterPro:IPR005512 | PFAM:PF03759 |
| InterPro:PRONE_dom | PFscan:PS51334 | PANTHER:PTHR33101 | PANTHER:PTHR33101:SF2 | InterPro:RopGEF | EnsemblPlantsGene:TraesCS6D01G244200 |
| EnsemblPlants:TraesCS6D01G244200.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:346554700..346558944
Molecular Weight (calculated)
60766.0 Da
IEP (calculated)
5.746
GRAVY (calculated)
-0.266
Length
543 amino acids
Sequence
(BLAST)
(BLAST)
001: MRMKTLACCR RRPQDFSVDM DQEPEKVTTY NGLESCIFNS SSYDEDSGVS ATTGADGCVT ADSLEDEASS CSSSKDVDGS SFSSQCLPLS KQEEHSLYEF
101: DTLDAIHLLP LKGKNPITYT LSAADIEIMK EKFAKLLLGD DVSGGARGVC AALALSNGIT NLSATIFGEL WKLEPLCEEK KIRWRKEMDW LLSPTTYMVE
201: LVPTKQNGAD GCMFEIMTPK ARSDVHVNLP ALQKLDSMLI EVLDSMVDTE YWYVESGSRS GGRGKNNGER QTKKWWLPSP CVPEQGLSQF QRKRIVFQAK
301: LVHQILKAAK SINEQVLLQI PIPMAVMDAL PKSGRSSLGE DLYHAITTDY IPIEEIFVSL SLKTEHSVLE TMNRLEGALF AWNQRISEER SRRSPARHSW
401: KFMKDSSSEL EKMSACIKRV ETLIQLLKSR FPNLPPTFID VVKVQYNEDV GHAIVEAYSR VLVGVAFSIL SRVAEIMLED DLVKKPNTPM ATLKFDLSSD
501: VYLAGITETP PGHIRRSLMD QISMVDGRFD AVVKKRGAKQ LMW
101: DTLDAIHLLP LKGKNPITYT LSAADIEIMK EKFAKLLLGD DVSGGARGVC AALALSNGIT NLSATIFGEL WKLEPLCEEK KIRWRKEMDW LLSPTTYMVE
201: LVPTKQNGAD GCMFEIMTPK ARSDVHVNLP ALQKLDSMLI EVLDSMVDTE YWYVESGSRS GGRGKNNGER QTKKWWLPSP CVPEQGLSQF QRKRIVFQAK
301: LVHQILKAAK SINEQVLLQI PIPMAVMDAL PKSGRSSLGE DLYHAITTDY IPIEEIFVSL SLKTEHSVLE TMNRLEGALF AWNQRISEER SRRSPARHSW
401: KFMKDSSSEL EKMSACIKRV ETLIQLLKSR FPNLPPTFID VVKVQYNEDV GHAIVEAYSR VLVGVAFSIL SRVAEIMLED DLVKKPNTPM ATLKFDLSSD
501: VYLAGITETP PGHIRRSLMD QISMVDGRFD AVVKKRGAKQ LMW
001: MMLMRRRLAC CSREREISID FDEHEQDKMI TYYGLETCII NNQSYEEESG TSRGDGCLTD SLDDDAFSSC SSSKDASSSF SSKWLPMKND EHSCDGLNLS
101: GRSQHFDAKE KKKQGYGSSQ HFDAKEKPGY VYCHLDVEAM KEKFSKLLLG EDVTGGCKGV QVALALSNAV THLATSIFGE LWKLEPLCEE KKQKWRREMD
201: WLLSPTNYMI ELVPSKQNDA NGRSLEIMTP KARADIHMNL PALQKLDSML IETLDSMVNT EFWYSEIGSR AEGKNKSTSE SKRWWLPSPQ VPKPGLSNSG
301: RKKLLDKGKV VYQVFKATKA INENILLEMP VPIVIKEAIP KSGKNSLGDE LYKMLAVESA TVDEIFISLN LGTEHAALET VNKLESAMFA WKERITEQGS
401: NGKSPVRASW SFAKDPLSEI GRNESLLNRA EALRTQIKSK HPNLPHSFLD ATKIQYDKDI GHAVLEAYSR TLANLAFRIL SRMGEILKED SLSNPNSPAP
501: PSCFPSSRDP YRTPERPLLS SRVRHSLTDD MNKADGTETG LDFLFADAKA SNSVNTTPSR SSRLWCLSKV PSDTSP
101: GRSQHFDAKE KKKQGYGSSQ HFDAKEKPGY VYCHLDVEAM KEKFSKLLLG EDVTGGCKGV QVALALSNAV THLATSIFGE LWKLEPLCEE KKQKWRREMD
201: WLLSPTNYMI ELVPSKQNDA NGRSLEIMTP KARADIHMNL PALQKLDSML IETLDSMVNT EFWYSEIGSR AEGKNKSTSE SKRWWLPSPQ VPKPGLSNSG
301: RKKLLDKGKV VYQVFKATKA INENILLEMP VPIVIKEAIP KSGKNSLGDE LYKMLAVESA TVDEIFISLN LGTEHAALET VNKLESAMFA WKERITEQGS
401: NGKSPVRASW SFAKDPLSEI GRNESLLNRA EALRTQIKSK HPNLPHSFLD ATKIQYDKDI GHAVLEAYSR TLANLAFRIL SRMGEILKED SLSNPNSPAP
501: PSCFPSSRDP YRTPERPLLS SRVRHSLTDD MNKADGTETG LDFLFADAKA SNSVNTTPSR SSRLWCLSKV PSDTSP
Arabidopsis Description
ROPGEF14Rop guanine nucleotide exchange factor 14 [Source:UniProtKB/Swiss-Prot;Acc:Q56WM6]
SUBAcon: [nucleus,mitochondrion]
SUBAcon: [nucleus,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.