Factsheet for Solyc12g096220.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075550	Potato	extracellular	23.49	83.01
CDY69871	Canola	cytosol	10.3	66.96
Solyc08g075120.2.1	Tomato	extracellular	47.25	61.1
KRH39757	Soybean	mitochondrion, nucleus	41.76	54.0
CDX84189	Canola	cytosol	36.13	53.56
KRH76428	Soybean	mitochondrion, nucleus	41.21	53.29
GSMUA_Achr8P14480_001	Banana	nucleus	18.82	52.9
Bra005323.1-P	Field mustard	nucleus	36.4	52.89
CDY31706	Canola	cytosol	36.4	52.68
KRH07751	Soybean	cytosol, nucleus, plastid	39.97	52.43
KRH07240	Soybean	cytosol, nucleus, plastid	39.42	51.62
CDY12411	Canola	cytosol	8.93	50.39
GSMUA_Achr11P...	Banana	cytosol	23.08	50.3
Bra005322.1-P	Field mustard	nucleus	26.1	48.47
CDY62299	Canola	cytosol, nucleus, plastid	37.23	48.39
CDY12303	Canola	nucleus	37.23	48.13
AT1G31650.1	Thale cress	mitochondrion, nucleus	38.05	48.09
KXG30927	Sorghum	cytosol	33.52	45.19
TraesCS6B01G298000.1	Wheat	cytosol	33.38	44.75
TraesCS6A01G270900.1	Wheat	cytosol	33.24	44.57
TraesCS6D01G244200.1	Wheat	cytosol	33.1	44.38
Zm00001d051553_P004	Maize	cytosol	32.69	44.07
Zm00001d017755_P002	Maize	cytosol	32.55	43.81
Os02t0702600-02	Rice	cytosol	32.55	43.65
GSMUA_Achr8P14490_001	Banana	cytosol	11.13	42.19
Solyc07g032730.2.1	Tomato	nucleus	22.39	39.85
GSMUA_Achr11P...	Banana	cytosol	9.34	37.36
HORVU6Hr1G068660.4	Barley	nucleus	31.04	37.36
Solyc01g094610.2.1	Tomato	nucleus	24.18	36.9
VIT_02s0087g00460.t01	Wine grape	mitochondrion, nucleus	46.02	36.73
Solyc06g066650.2.1	Tomato	nucleus	23.08	35.82
Solyc04g082110.2.1	Tomato	nucleus	22.12	35.7
Solyc08g006550.2.1	Tomato	nucleus	25.69	35.28
Solyc03g120650.2.1	Tomato	cytosol	24.04	34.86
Solyc12g044270.1.1	Tomato	nucleus	24.73	34.29
Solyc09g011480.2.1	Tomato	nucleus	25.96	32.14
Solyc01g111930.2.1	Tomato	nucleus	25.14	31.72
Solyc12g007150.1.1	Tomato	nucleus	23.21	30.45
HORVU6Hr1G041610.18	Barley	plastid	31.04	30.13
Solyc10g086660.1.1	Tomato	nucleus	26.24	28.13

Protein Annotations

Gene3D:1.10.15.30	Gene3D:1.20.58.2010	MapMan:17.1.2.1.5	MapMan:27.4.3.1	Gene3D:3.30.1390.20	ncoils:Coil
GO:GO:0003674	GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150
GO:GO:0065009	InterPro:IPR005512	InterPro:IPR023106	InterPro:IPR036919	UniProt:K4DH95	InterPro:L30_ferredoxin-like_sf
PFAM:PF00327	PFAM:PF03759	PFAM:PF08079	InterPro:PRONE_dom	ScanProsite:PS00634	PFscan:PS51334
PANTHER:PTHR33101	PANTHER:PTHR33101:SF2	InterPro:Ribosomal_L30_CS	InterPro:Ribosomal_L30_N	InterPro:Ribosomal_L30_central_dom_arc	InterPro:Ribosomal_L30_ferredoxin-like
InterPro:Ribosomal_L7_euk	InterPro:Ribosomal_L7_euk_arc	InterPro:RopGEF	SUPFAM:SSF55129	EnsemblPlantsGene:Solyc12g096220.1	EnsemblPlants:Solyc12g096220.1.1
TIGRFAMs:TIGR01310	UniParc:UPI0002769BA9	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:+:65236324..65242306

Molecular Weight (calculated)

81737.0 Da

IEP (calculated)

8.968

GRAVY (calculated)

-0.404

Length

728 amino acids

Sequence
(BLAST)

001: MNGTSGITTY DGLESCILNS QAYEYEKANS RVDVGVADSL YDDDSSSSSS NNAFGSYSSQ CTTSPQHLYV NEKSGSTQLS DVEMMKERFA KLLLGEDVTG
101: GSKGVSTALA LSNAITYLAA SVFGELWKLE PLAEERKIKW RTEMDLLLSP TNHMIELVPA RQSGSNGQGL EIMTPKVRAD IHMNLPALRK LDSMLLETLD
201: SMVSTEFWYT EVSSRAEGKN TKWCLPSPKV PVAGLSEVER KKLVNQGKLT NQILKAAKAI NENVLAEMPV PTVIKDALRK SSRTSLGDDL YRILTAESTS
301: AEEMLISLNL KSENSAVEVV NRLEGSILAW KERITDQASG KSPARRSWSF VRDPISELDK VEFLLNKAES LVQQLKFEYP NLPQTFLNVT KIQYGTDIGH
401: SILEAYSRVL LNLAHNILTR IGEVLQVDFS SNVNSPAATV YSSPISSDET LVYRSDENLN IYLPHLGHSY ILSCPPADQS HSLQQFQEMG ETPVPESVLK
501: KQKRSEEWAL AKKQELESAK KKNAENRKLI YNRAKLYAKE YAEQDKELIR LKREARLKGG FYVDPEAKLL FIIRIRGINA MPPQTKKILQ LLRLRQIFNG
601: VFLKVNKATV NMLHRVEPYV TYGYPNLKSV RELIYKRGYG KLDKQRIPLT DNSVIEQGLG KHGIICAEDL VHEIMTVGPS FKQANNFLWP FQLKAPLGGL
701: KKKRNHYVEG GDAGNRENFI NELIRRMN

Best Arabidopsis Sequence Match ( AT1G31650.1 )
(BLAST)

001: MMLMRRRLAC CSREREISID FDEHEQDKMI TYYGLETCII NNQSYEEESG TSRGDGCLTD SLDDDAFSSC SSSKDASSSF SSKWLPMKND EHSCDGLNLS
101: GRSQHFDAKE KKKQGYGSSQ HFDAKEKPGY VYCHLDVEAM KEKFSKLLLG EDVTGGCKGV QVALALSNAV THLATSIFGE LWKLEPLCEE KKQKWRREMD
201: WLLSPTNYMI ELVPSKQNDA NGRSLEIMTP KARADIHMNL PALQKLDSML IETLDSMVNT EFWYSEIGSR AEGKNKSTSE SKRWWLPSPQ VPKPGLSNSG
301: RKKLLDKGKV VYQVFKATKA INENILLEMP VPIVIKEAIP KSGKNSLGDE LYKMLAVESA TVDEIFISLN LGTEHAALET VNKLESAMFA WKERITEQGS
401: NGKSPVRASW SFAKDPLSEI GRNESLLNRA EALRTQIKSK HPNLPHSFLD ATKIQYDKDI GHAVLEAYSR TLANLAFRIL SRMGEILKED SLSNPNSPAP
501: PSCFPSSRDP YRTPERPLLS SRVRHSLTDD MNKADGTETG LDFLFADAKA SNSVNTTPSR SSRLWCLSKV PSDTSP

Arabidopsis Description

ROPGEF14Rop guanine nucleotide exchange factor 14 [Source:UniProtKB/Swiss-Prot;Acc:Q56WM6]
SUBAcon: [nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.