CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017755_P002	Maize	cytosol	95.93	95.75
Zm00001d051553_P004	Maize	cytosol	93.7	93.7
Os02t0702600-02	Rice	cytosol	86.85	86.37
TraesCS6B01G298000.1	Wheat	cytosol	86.48	86.0
TraesCS6D01G244200.1	Wheat	cytosol	86.3	85.82
TraesCS6A01G270900.1	Wheat	cytosol	86.3	85.82
HORVU6Hr1G068660.4	Barley	nucleus	73.89	65.95
GSMUA_Achr11P...	Banana	cytosol	40.56	65.57
GSMUA_Achr8P14480_001	Banana	nucleus	30.37	63.32
CDY69871	Canola	cytosol	12.41	59.82
GSMUA_Achr8P14490_001	Banana	cytosol	19.07	53.65
HORVU6Hr1G041610.18	Barley	plastid	73.89	53.2
KRH07751	Soybean	cytosol, nucleus, plastid	53.33	51.89
KRH07240	Soybean	cytosol, nucleus, plastid	52.78	51.26
KRH39757	Soybean	mitochondrion, nucleus	52.78	50.62
GSMUA_Achr11P...	Banana	cytosol	17.04	50.55
KRH76428	Soybean	mitochondrion, nucleus	52.59	50.44
CDY12411	Canola	cytosol	11.85	49.61
CDX84189	Canola	cytosol	44.81	49.29
Solyc08g075120.2.1	Tomato	extracellular	50.74	48.67
PGSC0003DMT400053650	Potato	cytosol, nucleus, plastid	50.37	48.31
CDY31706	Canola	cytosol	45.0	48.31
Bra005323.1-P	Field mustard	nucleus	44.44	47.9
AT1G31650.1	Thale cress	mitochondrion, nucleus	50.37	47.22
CDY12303	Canola	nucleus	48.52	46.54
CDY62299	Canola	cytosol, nucleus, plastid	48.15	46.43
Bra005322.1-P	Field mustard	nucleus	32.41	44.64
PGSC0003DMT400075550	Potato	extracellular	16.11	42.23
OQU84790	Sorghum	cytosol	30.19	37.05
EES03886	Sorghum	cytosol	34.44	34.13
EES11256	Sorghum	nucleus	29.26	33.55
Solyc12g096220.1.1	Tomato	nucleus	45.19	33.52
EER99291	Sorghum	nucleus, plastid	34.63	33.45
EER91970	Sorghum	plastid	29.81	32.92
EER99384	Sorghum	nucleus, plastid	28.15	32.83
VIT_02s0087g00460.t01	Wine grape	mitochondrion, nucleus	53.33	31.58
KXG33101	Sorghum	mitochondrion	31.85	30.77
OQU87589	Sorghum	nucleus	29.26	30.56
EES18335	Sorghum	cytosol	32.78	30.2
EES19937	Sorghum	mitochondrion	30.19	29.64

Protein Annotations

Gene3D:1.20.58.2010	MapMan:27.4.3.1	EntrezGene:8073867	UniProt:C5Y0D0	ProteinID:EES05665.1	GO:GO:0000003
GO:GO:0003674	GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150
GO:GO:0009653	GO:GO:0009856	GO:GO:0009987	GO:GO:0016043	GO:GO:0016049	GO:GO:0030154
GO:GO:0040007	GO:GO:0065009	GO:GO:0080092	InterPro:IPR005512	EnsemblPlants:KXG30927	ProteinID:KXG30927
ProteinID:KXG30927.1	ProteinID:KXG30928.1	ProteinID:KXG30984.2	PFAM:PF03759	InterPro:PRONE_dom	PFscan:PS51334
PANTHER:PTHR33101	PANTHER:PTHR33101:SF2	InterPro:RopGEF	EnsemblPlantsGene:SORBI_3004G269100	UniParc:UPI0001A85DF5	RefSeq:XP_002452689.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:61343743..61350249

Molecular Weight (calculated)

60255.5 Da

IEP (calculated)

6.519

GRAVY (calculated)

-0.250

Length

540 amino acids

Sequence
(BLAST)

001: MRMKTLACCR RRPQDFSIDM DKEPDRVMTY NGLETCIINS SAYDDDSAIS ATTGGDGCVT TDSLDDEVSS CSSKDASGSS FSSHCLSKQD EHSLDELGTP
101: IAIHLLPFKG KKPITYTLSA SDIENMKEKF AKLLLGDDTS GGARGVCAAL ALSNGIINLS ATVFGELWKL EPLCEDKKIR WRKEMDWLLS PTTYMVELVP
201: TKQSGADGCT FEIMTPKARS DVHVNLPALQ KLDAMLIEVM DSMIDTEFWY EESGSRADGR GKITGPRKSK KWWLPSPRVP EEGLSQFQRK RLVFQAKLVH
301: QILKAAKSIN EQVLFHMPIP AAVMDALPKS GRASLGEDLY QAITTQYIPI EEIFVSLSLK TEHSVLETIN RLEGAVFAWN QRILEERSKR SPGRHSWSFM
401: KDSSSELDKM SACIERVDTL VQLLKSRYPN LPPTFIDVLK VQYNVDVGHA IVEAYSRVLV GVAFSILSRV AEILLEDDLI KKPNTPMATL KFDLSSDVYL
501: AGITETPPGH IRRSLMDQIS MVDGRFDAVV KKKGVKQLRW

Best Arabidopsis Sequence Match ( AT1G31650.1 )
(BLAST)

001: MMLMRRRLAC CSREREISID FDEHEQDKMI TYYGLETCII NNQSYEEESG TSRGDGCLTD SLDDDAFSSC SSSKDASSSF SSKWLPMKND EHSCDGLNLS
101: GRSQHFDAKE KKKQGYGSSQ HFDAKEKPGY VYCHLDVEAM KEKFSKLLLG EDVTGGCKGV QVALALSNAV THLATSIFGE LWKLEPLCEE KKQKWRREMD
201: WLLSPTNYMI ELVPSKQNDA NGRSLEIMTP KARADIHMNL PALQKLDSML IETLDSMVNT EFWYSEIGSR AEGKNKSTSE SKRWWLPSPQ VPKPGLSNSG
301: RKKLLDKGKV VYQVFKATKA INENILLEMP VPIVIKEAIP KSGKNSLGDE LYKMLAVESA TVDEIFISLN LGTEHAALET VNKLESAMFA WKERITEQGS
401: NGKSPVRASW SFAKDPLSEI GRNESLLNRA EALRTQIKSK HPNLPHSFLD ATKIQYDKDI GHAVLEAYSR TLANLAFRIL SRMGEILKED SLSNPNSPAP
501: PSCFPSSRDP YRTPERPLLS SRVRHSLTDD MNKADGTETG LDFLFADAKA SNSVNTTPSR SSRLWCLSKV PSDTSP

Arabidopsis Description

ROPGEF14Rop guanine nucleotide exchange factor 14 [Source:UniProtKB/Swiss-Prot;Acc:Q56WM6]
SUBAcon: [nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.