CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88227
EER89207
EER97871
EES00507
EES04224
EES04804
EES06648
EES11990
EES12747
EES15089
KXG27287
KXG30263
KXG33416
OQU78843
OQU83188
OQU85473

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52240.1	KXG27287	AT1G22920.1	21798944
AT1G52240.1	OQU78843	AT1G34430.1	21798944
AT1G52240.1	EES04224	AT1G34570.1	21798944
AT1G52240.1	EES04804	AT2G42790.1	21798944
AT1G52240.1	EER97871	AT3G06430.1	21798944
AT1G52240.1	EES06648	AT3G16120.1	21798944
AT1G52240.1	KXG33416	AT3G16120.1	21798944
AT1G52240.1	EES12747	AT3G17668.1	21798944
AT1G52240.1	EES00507	AT4G15930.1	21798944
AT1G52240.1	OQU83188	AT4G15930.1	21798944
AT1G52240.1	EER89207	AT4G32960.1	21798944
AT1G52240.1	EES11990	AT5G22310.1	21798944
AT1G52240.1	KXG30263	AT5G22310.1	21798944
AT1G52240.1	EER88227	AT5G57660.1	21798944
AT1G52240.1	OQU85473	AT5G57660.1	21798944
AT1G52240.1	EES15089	AT5G64960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043383_P001	Maize	nucleus	93.81	92.73
Zm00001d012691_P001	Maize	cytosol, extracellular, mitochondrion, plastid	45.26	81.53
TraesCS3D01G296400.1	Wheat	cytosol	72.53	81.17
TraesCS3B01G331000.1	Wheat	nucleus	72.15	80.22
HORVU3Hr1G073200.1	Barley	nucleus	73.5	79.83
Os01t0760300-01	Rice	plasma membrane	78.72	78.12
TraesCS3A01G305500.1	Wheat	cytosol, mitochondrion, nucleus, plastid	69.63	76.6
OQU84790	Sorghum	cytosol	51.06	60.0
Bra018956.1-P	Field mustard	nucleus	51.84	50.0
Bra021162.1-P	Field mustard	nucleus	41.97	50.0
CDY45633	Canola	nucleus	49.9	49.33
AT1G52240.1	Thale cress	nucleus	51.64	49.17
KXG33101	Sorghum	mitochondrion	52.22	48.3
Bra030396.1-P	Field mustard	nucleus	50.1	48.23
EES19937	Sorghum	mitochondrion	51.26	48.18
CDX87879	Canola	nucleus	49.9	46.32
Bra027189.1-P	Field mustard	nucleus	47.39	46.23
CDX97723	Canola	nucleus	47.2	45.86
AT3G16130.1	Thale cress	nucleus	47.58	45.72
CDY30136	Canola	nucleus	47.78	44.91
CDY52982	Canola	nucleus	51.84	44.59
CDY67259	Canola	nucleus	51.45	44.26
CDY28381	Canola	nucleus	46.23	39.9
CDY20181	Canola	nucleus	46.23	39.37
EES11256	Sorghum	nucleus	33.27	36.52
EES03886	Sorghum	cytosol	38.1	36.15
EER99291	Sorghum	nucleus, plastid	39.07	36.14
EER99384	Sorghum	nucleus, plastid	32.11	35.85
EER91970	Sorghum	plastid	33.08	34.97
EES18335	Sorghum	cytosol	37.91	33.45
KXG30927	Sorghum	cytosol	30.56	29.26
Bra021161.1-P	Field mustard	nucleus	2.71	10.53

Protein Annotations

Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	MapMan:27.4.3.1	EntrezGene:8072103	UniProt:A0A1W0VZN6	GO:GO:0003674
GO:GO:0005085	GO:GO:0005089	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0065009
InterPro:IPR005512	EnsemblPlants:OQU87589	ProteinID:OQU87589	ProteinID:OQU87589.1	PFAM:PF03759	InterPro:PRONE_dom
PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF26	InterPro:RopGEF	EnsemblPlantsGene:SORBI_3003G303200	UniParc:UPI0001A84A2F
RefSeq:XP_002456387.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:63374869..63377084

Molecular Weight (calculated)

57439.1 Da

IEP (calculated)

5.246

GRAVY (calculated)

-0.626

Length

517 amino acids

Sequence
(BLAST)

001: MNAGAQLQRR SSVRRSRSMA KEEDRGQPPD EEVMSRSQGS STAPVLDKDS ATAPKSRPAD QSAGPSEMDL MKEKFAKLLL GEDMSGSGKG VPSALALSNA
101: VTNLAASVFG EQRKLEPMAP DRKGRWKKEV GWLLSVADHI VEFVAKKQVL DNGVEMEVMG TQQRRDLQAN IPALRKLDTM LLDYLDNFKE RNEFWYVKRD
201: SCSEGENEER SDEKWWIPIV KVPPGGLSPT SRGWLLHQKE LVNQVLKAAM AINANCLMEM SIPDTYIDTL PKNGRASLGD ALYRIITDVE FDPDDFLSTV
301: DLTSEHKILD LKDRIEASVI IWNRKVHNKD GKSSWGSAVS QEKREQFEER AQTLLLIIKH RFPGIPQSTL DIAKIQENRD VGFALLESYS RVLESLAFNV
401: MSRIEDVIQA DNVAREKAKK NAPPGADPGA GCRCAPEAGG DDDQSKTTTL LDFMGWTGDP DGKNDDVSPP PPPPPPELPA QDDGRLMKLP NIMTNLKQTY
501: MDKLDFLSGN RSPSGRH

Best Arabidopsis Sequence Match ( AT4G13240.1 )
(BLAST)

001: MVPSLERGIS ITSSFNLDRM FDSSPGKEQQ QPHLAETTMP ESQTQDSLGG SPVETSRPMT SRLISRRQDK QQSETEMMKD RFTKLLLGED MSGGGKGVSS
101: ALALSNAITN LAASIFGEQT KLQPMAPDRR ARWKKEIDWL LSVTDHIVEF VPSQQISKEG VCTEIMVTRQ RGDLLMNIPA LRKLDAMLID TLDNFRGHNE
201: FWYVSRDSEE GKQARNERTK DKWWLPPVKV PPNGLSESAR RMLHFQKDSV SQVQKAAMAI NAQVLSEMAI PDSYIESLPK NGRVSLGDSL YKSITEEWFD
301: PEQFLSTLDL STEHKVLDVK NRIEASIVIW KRKLHLKDNK SSWGSAVSLE KRELFEERAE TILVLLKQKF PGLPQSSLDI SKIQYNKDVG HAVLESYSRI
401: LESLGYTEMS RIDDVLYADS LARKQCTGEE TSDGGKIATE TDSASAGSSN YSGEEIEKLE SQNSSKTTLL DFIGWSDNSS KGQSEKPPKS PRMTPKKLSY
501: LEKLENLNGF RSPKDRH

Arabidopsis Description

ROPGEF9Rop guanine nucleotide exchange factor 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVQ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.