CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89430
EER89431
EER91113
EER94230
EER98550
EER98990
EER99396
EES05438
EES12241
EES14911
KXG19616
KXG25294
KXG30464
KXG35268
OQU75612
OQU75930
OQU76071
OQU81762
OQU85385
OQU89150

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06430.1	EER99396	AT1G30860.1	21798944
AT3G06430.1	EER98550	AT2G23290.1	21798944
AT3G06430.1	EES12241	AT3G14180.1	21798944
AT3G06430.1	KXG30464	AT3G14180.1	21798944
AT3G06430.1	EER91113	AT3G22550.1	21798944
AT3G06430.1	EER94230	AT3G22550.1	21798944
AT3G06430.1	EER89430	AT4G25200.1	21798944
AT3G06430.1	EER89431	AT4G25200.1	21798944
AT3G06430.1	KXG19616	AT4G25200.1	21798944
AT3G06430.1	OQU75612	AT4G25200.1	21798944
AT3G06430.1	OQU75930	AT4G25200.1	21798944
AT3G06430.1	OQU76071	AT4G25200.1	21798944
AT3G06430.1	OQU85385	AT4G25200.1	21798944
AT3G06430.1	EER98990	AT5G06710.1	21798944
AT3G06430.1	KXG25294	AT5G06710.1	21798944
AT3G06430.1	EES14911	AT5G06780.1	21798944
AT3G06430.1	KXG35268	AT5G06780.1	21798944
AT3G06430.1	OQU89150	AT5G06780.1	21798944
AT3G06430.1	OQU81762	AT5G56250.1	21798944
AT3G06430.1	EES05438	AT5G61380.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018693_P001	Maize	plastid	89.29	87.57
Os03t0309800-02	Rice	plastid	68.04	76.05
TraesCS4B01G138200.1	Wheat	cytosol, mitochondrion, plastid	68.21	72.49
TraesCS4D01G132900.3	Wheat	plastid	68.75	71.16
TraesCS4A01G178100.5	Wheat	plastid	68.57	70.98
HORVU4Hr1G024360.2	Barley	endoplasmic reticulum, vacuole	68.93	66.78
CDY24692	Canola	plastid	53.39	62.29
AT3G06430.1	Thale cress	plastid	53.39	61.52
KRH02371	Soybean	plastid	53.57	61.48
KRH02451	Soybean	plastid	53.57	61.48
CDY05264	Canola	plastid	53.57	61.22
Bra020748.1-P	Field mustard	plastid	53.57	61.1
VIT_05s0020g00690.t01	Wine grape	plastid	54.29	61.04
GSMUA_Achr11P...	Banana	plastid	58.04	59.85
Solyc12g098990.1.1	Tomato	plastid	51.25	57.98
PGSC0003DMT400011734	Potato	plastid	50.71	57.37
Solyc01g057200.2.1	Tomato	plastid	46.79	55.74
PGSC0003DMT400022191	Potato	plastid	49.29	55.09
KRH37687	Soybean	plastid	43.93	50.72
EER87934	Sorghum	plastid	31.25	35.57
KXG40345	Sorghum	plastid	30.36	34.98
OQU86802	Sorghum	cytosol	19.11	34.63
KXG30749	Sorghum	plastid	19.29	21.69
OQU84443	Sorghum	cytosol	16.79	15.54
OQU77078	Sorghum	mitochondrion	13.39	15.18
EER99505	Sorghum	plastid	17.5	14.67
EES13486	Sorghum	plastid	15.36	14.29
KXG36606	Sorghum	plastid	19.46	14.1
KXG20531	Sorghum	plastid	18.21	13.14
EES16159	Sorghum	plastid	17.68	11.35
KXG36530	Sorghum	plastid	16.07	10.99
OQU90703	Sorghum	plastid	15.71	9.81

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:8084261	UniProt:C5X7Y1	EnsemblPlants:EER97871	ProteinID:EER97871
ProteinID:EER97871.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009507	GO:GO:0009536	GO:GO:0009553	GO:GO:0009555	GO:GO:0009790
GO:GO:0009791	GO:GO:0009793	GO:GO:0009856	GO:GO:0009987	GO:GO:0016787	GO:GO:0019843
GO:GO:0048868	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF13041
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF301	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3002G013700	unigene:Sbi.2096
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A837D2	RefSeq:XP_002461350.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:-:1220641..1223299

Molecular Weight (calculated)

61926.4 Da

IEP (calculated)

9.223

GRAVY (calculated)

-0.469

Length

560 amino acids

Sequence
(BLAST)

001: MSPPAYTASP CTGSALFSNS RAPPPRLLLQ RGPGAPSSAG RHGGRVAPSQ ERRRPAPAQE KRRPSESSSR TQLPERKRHW KAGEFPGTAT ADGGGGGRLP
101: AQGKRHSKAG EFPGTDDGGR PAPALPQGKR HWKAGEFPGI AVAPGSGTPR TPLKNVKKRL DARAEAKAWA CTVTEALADR VTSKNWQEAL QVFEMLKEQP
201: FYHPKEGTFM KLIVLLGRSG QPARAHQLFD EMLQQGCQPT PGLYTALIGA YCRSGLLDDA LQLLNDMKGS PLCQPDVYTY STIIKACVDA TRFDLIDVMY
301: KDMAERSIAP NTVTQNIVLS GYGKAGRLDD MEKVLSDMLD STACKPDVWT MNIILSLFGN KGQVELMEKW YEKFRSYGIE PETRTLNILI GAYGKKRMYD
401: KMSAVMEYMR KLAFPWTTAT YNNVIEAFAE AGDAKNMEHT FNQMRSEGMK PDTKTFCCLI NGFSKAGQFH KVVGMVKLAE RLDVPANTSF HNAILGACAR
501: ADDLMEMERV FRHMKHTQCD PDAVTYSILV EAYRKEGMTD KIYALHQENP ALVPTDFVMV

Best Arabidopsis Sequence Match ( AT3G06430.1 )
(BLAST)

001: MASMSLSFSS SLCSSRIPEG KRRFRHRDVG IVRCVLAASK SSPGSVTKKR LWKDGEFPGI TEPVNQRRTP IKNVKKKLDR RSKANGWVNT VTETLSDLIA
101: KKQWLQALEV FDMLREQTFY QPKEGTYMKL LVLLGKSGQP NRAQKLFDEM LEEGLEPTVE LYTALLAAYT RSNLIDDAFS ILDKMKSFPQ CQPDVFTYST
201: LLKACVDASQ FDLVDSLYKE MDERLITPNT VTQNIVLSGY GRVGRFDQME KVLSDMLVST ACKPDVWTMN IILSVFGNMG KIDMMESWYE KFRNFGIEPE
301: TRTFNILIGS YGKKRMYDKM SSVMEYMRKL EFPWTTSTYN NIIEAFADVG DAKNMELTFD QMRSEGMKAD TKTFCCLING YANAGLFHKV ISSVQLAAKF
401: EIPENTAFYN AVISACAKAD DLIEMERVYI RMKERQCVCD SRTFEIMVEA YEKEGMNDKI YYLEQERQKL MDRTVATKEM ENLPAG

Arabidopsis Description

EMB2750Pentatricopeptide repeat-containing protein At3g06430, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQU6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.