CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022599_P002	Maize	plastid	93.31	93.62
Os03t0824100-01	Rice	plastid	83.95	86.75
HORVU5Hr1G114630.1	Barley	mitochondrion	78.26	84.27
TraesCS5A01G486300.1	Wheat	plastid	81.16	83.77
TraesCS5D01G500300.1	Wheat	plastid	81.05	83.56
TraesCS5B01G500100.1	Wheat	plastid	81.27	82.94
GSMUA_Achr1P18290_001	Banana	cytosol	44.93	60.69
CDX73117	Canola	plastid	48.83	50.75
Bra015889.1-P	Field mustard	plastid	48.49	50.35
AT1G74850.1	Thale cress	plastid	48.27	50.23
CDY45398	Canola	plastid	48.38	50.23
KRH56998	Soybean	nucleus	47.49	49.65
VIT_17s0000g07500.t01	Wine grape	plastid	47.94	49.48
KRH03384	Soybean	nucleus	47.27	49.36
PGSC0003DMT400063174	Potato	plastid	47.27	49.3
Solyc03g113630.2.1	Tomato	nucleus	46.82	48.84
OQU77078	Sorghum	mitochondrion	11.82	21.46
KXG20531	Sorghum	plastid	18.39	21.26
EER87934	Sorghum	plastid	11.59	21.14
EES16159	Sorghum	plastid	19.84	20.41
OQU86802	Sorghum	cytosol	7.02	20.39
KXG36606	Sorghum	plastid	17.39	20.18
KXG40345	Sorghum	plastid	10.48	19.34
OQU84443	Sorghum	cytosol	12.93	19.17
EER99505	Sorghum	plastid	14.27	19.16
KXG30749	Sorghum	plastid	10.37	18.67
KXG36530	Sorghum	plastid	15.5	16.97
EER97871	Sorghum	plastid	9.81	15.71
EES13486	Sorghum	plastid	10.03	14.95

Protein Annotations

Gene3D:1.25.40.10	MapMan:15.6.1.2.2.2	UniProt:A0A1Z5S433	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009295	GO:GO:0009507	GO:GO:0009508	GO:GO:0009536
GO:GO:0009987	GO:GO:0042793	GO:GO:0045893	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990
EnsemblPlants:OQU90703	ProteinID:OQU90703	ProteinID:OQU90703.1	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812
PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF726	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3001G031300
SUPFAM:SSF48452	InterPro:Smr_dom	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000B8BA4EC	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:2391412..2395531

Molecular Weight (calculated)

98688.7 Da

IEP (calculated)

5.214

GRAVY (calculated)

-0.125

Length

897 amino acids

Sequence
(BLAST)

001: MALVSTATVA SSSYHCDLLL FPGGRRRWRG PRWSRGGAGA RLAVLQRAGG GGLAVLERAG AGAGSAVLER TGAGAGAAAA ARREELVPAG NGRSSYEVES
101: LIDRLSNLPP RGSIARCLET ARHRLTLQDF AAVYREFSRR GDWQRSLRLF KYMQRQSWCR PDEHIHAIVI GVLGRQGPAL LDKCLEVFHD LPAESRTALS
201: YTSLIAAYAR NALHEEARAL LDQMKAAGVA PTAATYNTVL AACARATDPP VPFDMLLGLF AEMRHDASPS VRPDLTTYNT LLAAAAVRSL ADQSEMLLRT
301: MLEAGVSPDT VSYRYIVDAF ASAGNLSRVA ELFSEMAVMG NTADASAYLG LMEAHTRVGA TAEAVAVLRQ MQADGCAPTA ATYRVLLDLY GRQGRFDGVR
401: ELFREMRTAV PPDTATYNVL FRVYGDGGFF KEVVELFHDM LETGVEPDMV TCENVMAACG RGGLHEDARE VLEYMTREGM VPTADAYTGL VEALGHAAMY
501: EEAYVAFNMM TEIGSLPTLE TYNTLAFAYA RGGLFQEAEA IFSRMSNNAG IQKNKDSFDA LIEAYCQGAQ LDDAVKAYME MRKSRFNPDE RSLEGVLNAY
601: CIAGVIDESK EQFEELQSSV TLPSIIAYCM MLSLYARNDR WADAYDMLEE MKTNRASSTH QVIASLIKGE YDDSSNWQMV EYALENSTME GCDYSLRFFN
701: ALLDVLWWFG QKGRAARVLD QAVQFGLFPE LYRDTKLVWS LDVHRMSVGG ALVAVSVWLN KLYDRLVEDE DLPQLASVVV FFSISRRGEM EKSTITRGLP
801: TAKVVYSFLN DTLSASFHFP KWNKGRIICL KSQLKKLQSA VDSSNGSPAA GFVPMMNSHL PSPDSKIYTR EDQLGNGTGH LPDEPLVEEK ESELLAL

Best Arabidopsis Sequence Match ( AT1G74850.1 )
(BLAST)

001: MNLAIPNPNS HHLSFLIQNS SFIGNRRFAD GNRLRFLSGG NRKPCSFSGK IKAKTKDLVL GNPSVSVEKG KYSYDVESLI NKLSSLPPRG SIARCLDIFK
101: NKLSLNDFAL VFKEFAGRGD WQRSLRLFKY MQRQIWCKPN EHIYTIMISL LGREGLLDKC LEVFDEMPSQ GVSRSVFSYT ALINAYGRNG RYETSLELLD
201: RMKNEKISPS ILTYNTVINA CARGGLDWEG LLGLFAEMRH EGIQPDIVTY NTLLSACAIR GLGDEAEMVF RTMNDGGIVP DLTTYSHLVE TFGKLRRLEK
301: VCDLLGEMAS GGSLPDITSY NVLLEAYAKS GSIKEAMGVF HQMQAAGCTP NANTYSVLLN LFGQSGRYDD VRQLFLEMKS SNTDPDAATY NILIEVFGEG
401: GYFKEVVTLF HDMVEENIEP DMETYEGIIF ACGKGGLHED ARKILQYMTA NDIVPSSKAY TGVIEAFGQA ALYEEALVAF NTMHEVGSNP SIETFHSLLY
501: SFARGGLVKE SEAILSRLVD SGIPRNRDTF NAQIEAYKQG GKFEEAVKTY VDMEKSRCDP DERTLEAVLS VYSFARLVDE CREQFEEMKA SDILPSIMCY
601: CMMLAVYGKT ERWDDVNELL EEMLSNRVSN IHQVIGQMIK GDYDDDSNWQ IVEYVLDKLN SEGCGLGIRF YNALLDALWW LGQKERAARV LNEATKRGLF
701: PELFRKNKLV WSVDVHRMSE GGMYTALSVW LNDINDMLLK GDLPQLAVVV SVRGQLEKSS AARESPIAKA AFSFLQDHVS SSFSFTGWNG GRIMCQRSQL
801: KQLLSTKEPT SEESENKNLV ALANSPIFAA GTRASTSSDT NHSGNPTQRR TRTKKELAGS TA

Arabidopsis Description

PTAC2PTAC2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNJ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.