Factsheet for Bra015889.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45398	Canola	plastid	99.54	99.54
AT1G74850.1	Thale cress	plastid	94.21	94.43
VIT_17s0000g07500.t01	Wine grape	plastid	72.45	72.04
KRH03384	Soybean	nucleus	69.33	69.73
KRH56998	Soybean	nucleus	68.98	69.46
PGSC0003DMT400063174	Potato	plastid	68.17	68.49
Solyc03g113630.2.1	Tomato	nucleus	67.59	67.91
GSMUA_Achr1P18290_001	Banana	cytosol	48.03	62.5
HORVU5Hr1G114630.1	Barley	mitochondrion	49.54	51.38
Os03t0824100-01	Rice	plastid	51.04	50.81
TraesCS5A01G486300.1	Wheat	plastid	50.23	49.94
TraesCS5D01G500300.1	Wheat	plastid	50.0	49.66
TraesCS5B01G500100.1	Wheat	plastid	50.0	49.15
OQU90703	Sorghum	plastid	50.35	48.49
Zm00001d022599_P002	Maize	plastid	49.88	48.21
Bra018246.1-P	Field mustard	plastid	13.19	23.08
Bra035290.1-P	Field mustard	plastid	20.02	21.62
Bra024454.1-P	Field mustard	plastid	19.21	20.32
Bra019526.1-P	Field mustard	cytosol	6.13	20.08
Bra004642.1-P	Field mustard	cytosol, plastid	18.98	20.05
Bra037464.1-P	Field mustard	plastid	12.04	19.44
Bra011847.1-P	Field mustard	plastid	10.76	19.14
Bra035352.1-P	Field mustard	mitochondrion	10.65	19.09
Bra006974.1-P	Field mustard	cytosol, endoplasmic reticulum	11.0	19.04
Bra017881.1-P	Field mustard	plastid	14.93	18.43
Bra018247.1-P	Field mustard	nucleus	6.13	17.49
Bra020748.1-P	Field mustard	plastid	9.84	17.31
Bra021733.1-P	Field mustard	cytosol	20.25	15.94
Bra005366.1-P	Field mustard	cytosol, mitochondrion, nucleus	13.66	15.53

Protein Annotations

Gene3D:1.25.40.10	MapMan:15.6.1.2.2.2	EnsemblPlantsGene:Bra015889	EnsemblPlants:Bra015889.1	EnsemblPlants:Bra015889.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009295	GO:GO:0009507
GO:GO:0009508	GO:GO:0009536	GO:GO:0009987	GO:GO:0042793	GO:GO:0045893	InterPro:IPR002625
InterPro:IPR002885	InterPro:IPR011990	UniProt:M4DHB2	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812
PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF726	InterPro:Pentatricopeptide_repeat	SMART:SM00463
InterPro:Smr_dom	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002541EEC	SEG:seg	:

Description

AT1G74850 (E=0.0) PTAC2 | PTAC2 (PLASTID TRANSCRIPTIONALLY ACTIVE2)

Coordinates

chrA07:-:20351979..20354906

Molecular Weight (calculated)

96515.1 Da

IEP (calculated)

5.530

GRAVY (calculated)

-0.258

Length

864 amino acids

Sequence
(BLAST)

001: MNLAIPNPNS HHLSFLIQNS TFITNRRLFA NNPNRLTFLS GGKRPSSVAK INAKTKDLVL GNPSVSVEKG KYTYDVESLI NKLSSLPPRG SIARCLDIFK
101: NKLSLNDFAL VFKEFAGRGD WQRSLRLFKY MQRQIWCKPN EHIYTIMISL LGREGLLDKC LEVFDEMPSQ GVARSVFSYT ALINAYGRNG RYETSLELLE
201: RMKSEKISPS ILTYNTVINA CARGGLDWEG LLGLFAEMRH EGIQPDIVTY NTLLSACAIR GLGDESEMVF RTMNDGGIVP DLTTYSHLVE TFGKLGRLEK
301: VCDLLNEMAS GGSLPDITSY NVLLEAYAKS GSIKEAMGVF HQMQAAGCTP NANTYSVLLN LFGQSGRYDD VRQLFLEMKS SNTDPDAATY NILIDVFGEG
401: GYFKEVVTLF HDMVEENIEP DMETYEGIIF ACGKGGLHED ARKILQYMTA KDVVPSSKAY TGVIEAFGQA ALYEEALVAF NTMHEVGSNP SIETFHSLLY
501: SFARGGLFKE SEVILSRLVD SGIPRNRDTF NATIEAYKQG GKFEEAVKTY VDMEKSRCDP DERTLEAVLS VYSCARLVDE CREQFEEMKA SDILPSIMCY
601: CMMLSVYGKT ERWDDANELL EEMLSNRVSN IHQVIGQMIK GDYDDDSNWQ IVEYVLDKLN SEGCGLGIRF YNALLDALWW LGQKERAARV LNEATKRGIF
701: PELFRRNKLV WSVDVHRMSE GGMYTALSVW LNDLSDMLVK GQDIPQLAVV VSVRGQLEKS SAARESPITK AAFSFLQDHV SSSFSFTGWN GGRIMCQRSQ
801: LKQLLSTQEP TSEESQKSSL VALTNSPIFS AGTRTSTSSD TNNSSGNPSQ RRTRMKKELA GSPA

Best Arabidopsis Sequence Match ( AT1G74850.1 )
(BLAST)

001: MNLAIPNPNS HHLSFLIQNS SFIGNRRFAD GNRLRFLSGG NRKPCSFSGK IKAKTKDLVL GNPSVSVEKG KYSYDVESLI NKLSSLPPRG SIARCLDIFK
101: NKLSLNDFAL VFKEFAGRGD WQRSLRLFKY MQRQIWCKPN EHIYTIMISL LGREGLLDKC LEVFDEMPSQ GVSRSVFSYT ALINAYGRNG RYETSLELLD
201: RMKNEKISPS ILTYNTVINA CARGGLDWEG LLGLFAEMRH EGIQPDIVTY NTLLSACAIR GLGDEAEMVF RTMNDGGIVP DLTTYSHLVE TFGKLRRLEK
301: VCDLLGEMAS GGSLPDITSY NVLLEAYAKS GSIKEAMGVF HQMQAAGCTP NANTYSVLLN LFGQSGRYDD VRQLFLEMKS SNTDPDAATY NILIEVFGEG
401: GYFKEVVTLF HDMVEENIEP DMETYEGIIF ACGKGGLHED ARKILQYMTA NDIVPSSKAY TGVIEAFGQA ALYEEALVAF NTMHEVGSNP SIETFHSLLY
501: SFARGGLVKE SEAILSRLVD SGIPRNRDTF NAQIEAYKQG GKFEEAVKTY VDMEKSRCDP DERTLEAVLS VYSFARLVDE CREQFEEMKA SDILPSIMCY
601: CMMLAVYGKT ERWDDVNELL EEMLSNRVSN IHQVIGQMIK GDYDDDSNWQ IVEYVLDKLN SEGCGLGIRF YNALLDALWW LGQKERAARV LNEATKRGLF
701: PELFRKNKLV WSVDVHRMSE GGMYTALSVW LNDINDMLLK GDLPQLAVVV SVRGQLEKSS AARESPIAKA AFSFLQDHVS SSFSFTGWNG GRIMCQRSQL
801: KQLLSTKEPT SEESENKNLV ALANSPIFAA GTRASTSSDT NHSGNPTQRR TRTKKELAGS TA

Arabidopsis Description

PTAC2PTAC2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNJ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.