Factsheet for Bra005366.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31666	Canola	cytosol	75.13	91.65
AT2G35130.2	Thale cress	endoplasmic reticulum, golgi	66.58	82.54
VIT_01s0011g01970.t01	Wine grape	cytosol	50.39	65.81
PGSC0003DMT400027006	Potato	cytosol, plastid	47.37	62.5
GSMUA_Achr7P03530_001	Banana	cytosol	46.58	60.1
Os02t0170000-02	Rice	cytosol	36.97	59.91
Solyc02g068760.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	47.5	57.95
KRG90712	Soybean	cytosol, endoplasmic reticulum, plastid	47.63	57.92
Zm00001d015377_P003	Maize	plastid	42.89	54.61
OQU84443	Sorghum	cytosol	43.03	54.05
HORVU6Hr1G032270.20	Barley	cytosol, mitochondrion	40.26	47.44
TraesCS6D01G147800.2	Wheat	cytosol, mitochondrion	34.34	44.01
TraesCS6B01G186300.2	Wheat	cytosol, mitochondrion	35.26	42.74
TraesCS6A01G163600.2	Wheat	nucleus	35.39	42.63
Bra006974.1-P	Field mustard	cytosol, endoplasmic reticulum	13.16	20.04
Bra011847.1-P	Field mustard	plastid	11.58	18.11
Bra020748.1-P	Field mustard	plastid	11.45	17.72
Bra037464.1-P	Field mustard	plastid	12.24	17.38
Bra017881.1-P	Field mustard	plastid	14.74	16.0
Bra019526.1-P	Field mustard	cytosol	5.53	15.91
Bra035352.1-P	Field mustard	mitochondrion	10.0	15.77
Bra035290.1-P	Field mustard	plastid	16.58	15.75
Bra024454.1-P	Field mustard	plastid	16.58	15.42
Bra018246.1-P	Field mustard	plastid	9.08	13.97
Bra015889.1-P	Field mustard	plastid	15.53	13.66
Bra004642.1-P	Field mustard	cytosol, plastid	14.08	13.08
Bra021733.1-P	Field mustard	cytosol	13.82	9.56
Bra018247.1-P	Field mustard	nucleus	2.5	6.27

Protein Annotations

MapMan:1.1.8.1.6.1	Gene3D:1.25.40.10	MapMan:1.3.4.4	InterPro:2-oxoA_DH_lipoyl-BS	Gene3D:2.40.50.100	InterPro:Biotin_lipoyl
EnsemblPlantsGene:Bra005366	EnsemblPlants:Bra005366.1	EnsemblPlants:Bra005366.1-P	InterPro:GCV_H	InterPro:GCV_H/Fam206	InterPro:GCV_H_sub
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005960	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0019464	InterPro:IPR000089	InterPro:IPR002885	InterPro:IPR011990	UniProt:M4CMC8	HAMAP:MF_00272
PFAM:PF01597	PFAM:PF13041	PFAM:PF13812	ScanProsite:PS00189	PFscan:PS50968	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF421	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF51230	SUPFAM:SSF81901	InterPro:Single_hybrid_motif
TIGRFAMs:TIGR00527	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002547E61	SEG:seg	:

Description

AT2G35130 (E=2e-284) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA05:+:5042440..5046937

Molecular Weight (calculated)

85975.5 Da

IEP (calculated)

7.201

GRAVY (calculated)

-0.296

Length

760 amino acids

Sequence
(BLAST)

001: MKMKVKTFTS PEPLLNGYSH PCDLLSILHE QQLKKEKSVT IQYRREQYIS IYTTALFQSS PHLSGHVRTH SHSLSRWLVA GNALNCLFID TSSFQRYLRF
101: GVTHFNGGGV VKSCRKEGFV IDERGKLKRF NKKKLSRRRC GSLRGRGWKY GSGFVDGIFP VLSPIAQKIL SFIQRETDPE KVADVLGTLP STHASWDDLI
201: NVAVQLRLNK KWDPIVLVCE WILRRSSFQP DVICFNLLID AYGQKLRYKE AELLYVQLLE SRCVPTEDTY ALLVKAYCLA GLIEKAEAVL IEMQKHHVTP
301: SATVYNAYIE GLTKRKGNTE EAIDVFQRMK RERCKPTTET YNLMINLYGK ASKSYMSWKL FCEMRSHQCK PNICTYTALV NAFAREGLCQ KAEEVFEQLQ
401: EDGLEPDVYV YNALMEAYSR AGYPYGAAEI FSLMQHMGCE PDRASYNIMV DAYGRAGLHS DAEAVFEQMK KLGISPTMKS HMLLLSAYSR ARDVTKCEAI
501: VKEMSENGVE PDTFVLNSML NLYGRLGQFT KMEKILAEMM QNGPCKADIS TYNILINVYG KAGYLERVEE LFDEVKERKL RPDVVTWTSR MGGYSRKKLY
601: VKCVEIFEEM IDSGCVPDGG TAKVLLKACA MVLKDLKYAD SHEWVKIDGN KATFGITDHA QDHLGDVVYV ELPDLGRSVS QGESFGAVES VKATSDINSP
701: VSGKVVEVNE VLTESPGLVN TSPYEEGWII KVELSDAGEV EKLMDSDKYS KFCEEEDAKH

Best Arabidopsis Sequence Match ( AT2G35130.3 )
(BLAST)

001: MLVAGNALNC LFIDSSGFQR YLGFGVTNLN GATVKSYKQE GFVIDERGKL KRFNRKKLSR KRCGSLRGRG WKYGSGFVDG IFPVLSPIAQ KILSFIQKET
101: DPDKVADVLG ALPSTHASWD DLINVSVQLR LNKKWDSIIL VCEWILRKSS FQPDVICFNL LIDAYGQKFQ YKEAESLYVQ LLESRYVPTE DTYALLIKAY
201: CMAGLIERAE VVLVEMQNHH VSPSVTVYNA YIEGLMKRKG NTEEAIDVFQ RMKRDRCKPT TETYNLMINL YGKASKSYMS WKLYCEMRSH QCKPNICTYT
301: ALVNAFAREG LCEKAEEIFE QLQEDGLEPD VYVYNALMES YSRAGYPYGA AEIFSLMQHM GCEPDRASYN IMVDAYGRAG LHSDAEAVFE EMKRLGIAPT
401: MKSHMLLLSA YSKARDVTKC EAIVKEMSEN GVEPDTFVLN SMLNLYGRLG QFTKMEKILA EMENGPCTAD ISTYNILINI YGKAGFLERI EELFVELKEK
501: NFRPDVVTWT SRIGAYSRKK LYVKCLEVFE EMIDSGCAPD GGTAKVLLSA CSSEEQVEQV TSVLRTMHKG VTVSSLVPKL MAKSLTVN

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IJS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.