Factsheet for TraesCS6A01G163600.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G147800.2	Wheat	cytosol, mitochondrion	83.36	88.7
TraesCS6B01G186300.2	Wheat	cytosol, mitochondrion	87.96	88.52
HORVU6Hr1G032270.20	Barley	cytosol, mitochondrion	60.38	59.07
OQU84443	Sorghum	cytosol	56.58	59.01
Zm00001d015377_P003	Maize	plastid	55.47	58.63
Os02t0170000-02	Rice	cytosol	42.79	57.57
VIT_01s0011g01970.t01	Wine grape	cytosol	42.63	46.22
GSMUA_Achr7P03530_001	Banana	cytosol	42.16	45.16
PGSC0003DMT400027006	Potato	cytosol, plastid	40.89	44.79
KRG90712	Soybean	cytosol, endoplasmic reticulum, plastid	41.52	41.92
CDY31666	Canola	cytosol	41.36	41.89
AT2G35130.2	Thale cress	endoplasmic reticulum, golgi	40.57	41.76
Solyc02g068760.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	40.73	41.25
CDX84260	Canola	cytosol, nucleus, plastid	41.68	40.9
Bra005366.1-P	Field mustard	cytosol, mitochondrion, nucleus	42.63	35.39
TraesCS7A01G407400.1	Wheat	cytosol	13.63	18.82
TraesCS2A01G194800.1	Wheat	endoplasmic reticulum, extracellular	13.79	18.71
TraesCS3A01G523700.1	Wheat	plastid	15.21	15.79
TraesCS5A01G528400.1	Wheat	plastid	12.52	14.74
TraesCS7A01G133100.1	Wheat	plastid	11.41	14.17
TraesCS4A01G178100.5	Wheat	plastid	11.25	13.12
TraesCS7A01G495500.1	Wheat	plastid	16.8	13.07
TraesCS6A01G303300.1	Wheat	plastid	10.14	11.85
TraesCS5A01G085800.1	Wheat	plastid	15.06	11.07
TraesCS5A01G486300.1	Wheat	plastid	15.06	10.93
TraesCS2A01G239500.2	Wheat	plastid	14.74	10.89
TraesCS5A01G486200.1	Wheat	cytosol	0.0	0.0

Protein Annotations

MapMan:1.1.8.1.6.1	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885
InterPro:IPR011990	PFAM:PF13041	PFAM:PF17177	InterPro:PPR_long	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF421	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	EnsemblPlantsGene:TraesCS6A01G163600
EnsemblPlants:TraesCS6A01G163600.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6A:-:158940578..158943175

Molecular Weight (calculated)

69842.5 Da

IEP (calculated)

10.111

GRAVY (calculated)

-0.581

Length

631 amino acids

Sequence
(BLAST)

001: MLLVPPQLSE TEATTSSTIS VPWENCKFAS EDLHPVLIML RIQAPLHYHP MTAGPRWRIC ACGNIQQGTS SLHDAEVNSS RYGERKGNRK HPGAYIDKDG
101: EARTFDRKKI SRKRGGAMRG RGWKYGSGFV DGVFPVLSPM AQDILELVQK GTDAAKVWEA LDSVPPTHAL WDDVLNVAVQ LRLSRQWDPV ISVCEWIVHR
201: SSFRPDVVCY NLLIDAYGRR RRLGKAEAMY AALLEARCVP TEDTYALLLR AYCNAGSLHR AEGVISEMRE HGIPPSATVY NAYLDGLLKA RCSEKAVEVY
301: ERMKRERCRT NTETYTLMIN VYGKSKQPMS AMKVFKEMQS LGCKANICTY TALVNAFARE GLCEKAEEVF EEMQQAGHEP DVYAYNALME AYSRAGFPQA
401: ASEIFSLMQH MGCEPDRASY NILVDAYGRA GLHRGTYVNH QLLERRLLRR GAEPDRHGVF DGRRGGGGVR VAEAAGDGAD DEVAHAAAGG ARPVRQRGAV
501: RGGDGAAAQV GARPGHLRAQ RHAQRLRPRR PPRRHGAAAR RHGTPGDERR GHVQRGGERL RPRRVPGADG GGVRVAGAAG PRRRRGDLDV PHGRLRQEEG
601: VPAVPRDLRG DGGRRVLPGR RDRQGARRGL L

Best Arabidopsis Sequence Match ( AT2G35130.1 )
(BLAST)

001: MLVAGNALNC LFIDSSGFQR YLGFGVTNLN GATVKSYKQE GFVIDERGKL KRFNRKKLSR KRCGSLRGRG WKYGSGFVDG IFPVLSPIAQ KILSFIQKET
101: DPDKVADVLG ALPSTHASWD DLINVSVQLR LNKKWDSIIL VCEWILRKSS FQPDVICFNL LIDAYGQKFQ YKEAESLYVQ LLESRYVPTE DTYALLIKAY
201: CMAGLIERAE VVLVEMQNHH VSPKTIGVTV YNAYIEGLMK RKGNTEEAID VFQRMKRDRC KPTTETYNLM INLYGKASKS YMSWKLYCEM RSHQCKPNIC
301: TYTALVNAFA REGLCEKAEE IFEQLQEDGL EPDVYVYNAL MESYSRAGYP YGAAEIFSLM QHMGCEPDRA SYNIMVDAYG RAGLHSDAEA VFEEMKRLGI
401: APTMKSHMLL LSAYSKARDV TKCEAIVKEM SENGVEPDTF VLNSMLNLYG RLGQFTKMEK ILAEMENGPC TADISTYNIL INIYGKAGFL ERIEELFVEL
501: KEKNFRPDVV TWTSRIGAYS RKKLYVKCLE VFEEMIDSGC APDGGTAKVL LSACSSEEQV EQVTSVLRTM HKGVTVSSLV PKLMAKSLTV N

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IJS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.