Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G147800.2 | Wheat | cytosol, mitochondrion | 88.52 | 93.59 |
| TraesCS6A01G163600.2 | Wheat | nucleus | 88.52 | 87.96 |
| HORVU6Hr1G032270.20 | Barley | cytosol, mitochondrion | 60.61 | 58.91 |
| OQU84443 | Sorghum | cytosol | 56.62 | 58.68 |
| Zm00001d015377_P003 | Maize | plastid | 55.82 | 58.63 |
| Os02t0170000-02 | Rice | cytosol | 43.7 | 58.42 |
| VIT_01s0011g01970.t01 | Wine grape | cytosol | 43.7 | 47.08 |
| GSMUA_Achr7P03530_001 | Banana | cytosol | 43.54 | 46.35 |
| PGSC0003DMT400027006 | Potato | cytosol, plastid | 41.47 | 45.14 |
| AT2G35130.2 | Thale cress | endoplasmic reticulum, golgi | 41.47 | 42.41 |
| CDY31666 | Canola | cytosol | 42.11 | 42.38 |
| KRG90712 | Soybean | cytosol, endoplasmic reticulum, plastid | 41.95 | 42.08 |
| Solyc02g068760.2.1 | Tomato | cytosol, endoplasmic reticulum, plastid | 41.15 | 41.41 |
| CDX84260 | Canola | cytosol, nucleus, plastid | 42.26 | 41.21 |
| Bra005366.1-P | Field mustard | cytosol, mitochondrion, nucleus | 42.74 | 35.26 |
| TraesCS7B01G307500.2 | Wheat | cytosol | 13.56 | 16.38 |
| TraesCS7B01G033900.1 | Wheat | plastid | 11.48 | 14.2 |
| TraesCS4B01G359900.1 | Wheat | plastid | 11.32 | 14.12 |
| TraesCS2B01G238300.1 | Wheat | plastid | 14.67 | 13.75 |
| TraesCS7B01G401800.2 | Wheat | plastid | 17.22 | 13.25 |
| TraesCS2B01G212000.1 | Wheat | plastid | 16.75 | 13.21 |
| TraesCS4B01G138200.1 | Wheat | cytosol, mitochondrion, plastid | 10.69 | 12.71 |
| TraesCS2B01G269700.1 | Wheat | plastid | 14.51 | 11.15 |
| TraesCS5B01G500100.1 | Wheat | plastid | 15.31 | 10.92 |
| TraesCS6B01G332800.1 | Wheat | plastid | 9.73 | 10.78 |
| TraesCS5B01G091600.1 | Wheat | plastid | 14.67 | 10.72 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G186300.2 | EnsemblPlantsGene:TraesCS6B01G186300 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:PPR_long | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 |
| PANTHER:PTHR24015:SF421 | PFAM:PF13041 | PFAM:PF17177 | PFscan:PS51375 | SEG:seg | SUPFAM:SSF81901 |
| TIGRFAMs:TIGR00756 | MapMan:1.1.8.1.6.1 | : | : | : | : |
Description
No Description!
Coordinates
chr6B:+:212418216..212420759
Molecular Weight (calculated)
69229.8 Da
IEP (calculated)
10.456
GRAVY (calculated)
-0.636
Length
627 amino acids
Sequence
(BLAST)
(BLAST)
001: MLRIQAPLHY HPTNAGPRWH ICACGSIQQG TSSLHDAEVN PSGYGERKNR KHPGAYIDKD GEARTFDRKK ISRKRGGAMR GRGWKYGSGF VDGVFPVLSP
101: MAQDILELVQ KGTDDAKVWE ALDDVPPTHA LWDDVLNVAV QLRLNRQWDP IISVCEWIVH RSSFRPDVVC YNLLIDAYGR RRRLGKAEAM YAALLEARCV
201: PTEDTYALLL RAYCTAGSLH RAEGVISEMR EHGIPPSATV YNAYLDGLLK ARCAEKAVEV YQRMKRERCR TNTETYTLMI NVYGKSKQPM SAMKVFKEMQ
301: SLGCKANICT YTALVNAFAR EGLCEKAEEA FEEMQQAGHE PDVYAYNALM EAYSRAGFPQ AASEIFSLMQ HMGCDPDRAS YNILVDAYGR AGLHRGAYVN
401: HGLLERRLLR RGAESDSHGV SVDGRRGGGR VRVAEAAGDG ADDEVAHAAA GGARQVRQRG ALRGGDGAAA QVGPRAGHLR AQRHAQRLRP RRPARRHGAA
501: ARRHGAPGDA RRGHVQRGRQ RLRPRRVPGE DGGGVRVAGA EGPRRRRGHV DVPHGRLRQE EGVPAVPGDL RGDGGRRVLP GRRDGQGARR GVLRRAAGGA
601: GHRHRQVHAQ GGQDIVHHMR KMKKILC
101: MAQDILELVQ KGTDDAKVWE ALDDVPPTHA LWDDVLNVAV QLRLNRQWDP IISVCEWIVH RSSFRPDVVC YNLLIDAYGR RRRLGKAEAM YAALLEARCV
201: PTEDTYALLL RAYCTAGSLH RAEGVISEMR EHGIPPSATV YNAYLDGLLK ARCAEKAVEV YQRMKRERCR TNTETYTLMI NVYGKSKQPM SAMKVFKEMQ
301: SLGCKANICT YTALVNAFAR EGLCEKAEEA FEEMQQAGHE PDVYAYNALM EAYSRAGFPQ AASEIFSLMQ HMGCDPDRAS YNILVDAYGR AGLHRGAYVN
401: HGLLERRLLR RGAESDSHGV SVDGRRGGGR VRVAEAAGDG ADDEVAHAAA GGARQVRQRG ALRGGDGAAA QVGPRAGHLR AQRHAQRLRP RRPARRHGAA
501: ARRHGAPGDA RRGHVQRGRQ RLRPRRVPGE DGGGVRVAGA EGPRRRRGHV DVPHGRLRQE EGVPAVPGDL RGDGGRRVLP GRRDGQGARR GVLRRAAGGA
601: GHRHRQVHAQ GGQDIVHHMR KMKKILC
001: MLVAGNALNC LFIDSSGFQR YLGFGVTNLN GATVKSYKQE GFVIDERGKL KRFNRKKLSR KRCGSLRGRG WKYGSGFVDG IFPVLSPIAQ KILSFIQKET
101: DPDKVADVLG ALPSTHASWD DLINVSVQLR LNKKWDSIIL VCEWILRKSS FQPDVICFNL LIDAYGQKFQ YKEAESLYVQ LLESRYVPTE DTYALLIKAY
201: CMAGLIERAE VVLVEMQNHH VSPSVTVYNA YIEGLMKRKG NTEEAIDVFQ RMKRDRCKPT TETYNLMINL YGKASKSYMS WKLYCEMRSH QCKPNICTYT
301: ALVNAFAREG LCEKAEEIFE QLQEDGLEPD VYVYNALMES YSRAGYPYGA AEIFSLMQHM GCEPDRASYN IMVDAYGRAG LHSDAEAVFE EMKRLGIAPT
401: MKSHMLLLSA YSKARDVTKC EAIVKEMSEN GVEPDTFVLN SMLNLYGRLG QFTKMEKILA EMENGPCTAD ISTYNILINI YGKAGFLERI EELFVELKEK
501: NFRPDVVTWT SRIGAYSRKK LYVKCLEVFE EMIDSGCAPD GGTAKVLLSA CSSEEQVEQV TSVLRTMHKG VTVSSLVPKL MAKSLTVN
101: DPDKVADVLG ALPSTHASWD DLINVSVQLR LNKKWDSIIL VCEWILRKSS FQPDVICFNL LIDAYGQKFQ YKEAESLYVQ LLESRYVPTE DTYALLIKAY
201: CMAGLIERAE VVLVEMQNHH VSPSVTVYNA YIEGLMKRKG NTEEAIDVFQ RMKRDRCKPT TETYNLMINL YGKASKSYMS WKLYCEMRSH QCKPNICTYT
301: ALVNAFAREG LCEKAEEIFE QLQEDGLEPD VYVYNALMES YSRAGYPYGA AEIFSLMQHM GCEPDRASYN IMVDAYGRAG LHSDAEAVFE EMKRLGIAPT
401: MKSHMLLLSA YSKARDVTKC EAIVKEMSEN GVEPDTFVLN SMLNLYGRLG QFTKMEKILA EMENGPCTAD ISTYNILINI YGKAGFLERI EELFVELKEK
501: NFRPDVVTWT SRIGAYSRKK LYVKCLEVFE EMIDSGCAPD GGTAKVLLSA CSSEEQVEQV TSVLRTMHKG VTVSSLVPKL MAKSLTVN
Arabidopsis Description
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IJS7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.