CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84260	Canola	cytosol, nucleus, plastid	94.06	91.14
AT2G35130.2	Thale cress	endoplasmic reticulum, golgi	83.63	84.99
Bra005366.1-P	Field mustard	cytosol, mitochondrion, nucleus	91.65	75.13
VIT_01s0011g01970.t01	Wine grape	cytosol	62.28	66.67
PGSC0003DMT400027006	Potato	cytosol, plastid	59.39	64.24
Os02t0170000-02	Rice	cytosol	46.39	61.62
GSMUA_Achr7P03530_001	Banana	cytosol	57.78	61.12
Solyc02g068760.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	59.39	59.39
KRG90712	Soybean	cytosol, endoplasmic reticulum, plastid	59.23	59.04
Zm00001d015377_P003	Maize	plastid	53.29	55.61
OQU84443	Sorghum	cytosol	53.61	55.21
HORVU6Hr1G032270.20	Barley	cytosol, mitochondrion	50.24	48.53
TraesCS6D01G147800.2	Wheat	cytosol, mitochondrion	41.57	43.68
TraesCS6B01G186300.2	Wheat	cytosol, mitochondrion	42.38	42.11
TraesCS6A01G163600.2	Wheat	nucleus	41.89	41.36
CDY06027	Canola	plastid	17.18	20.15
CDX71198	Canola	cytosol	17.98	19.79
CDX78150	Canola	plastid	15.25	19.59
CDX71917	Canola	plastid	17.01	19.45
CDX73576	Canola	plastid	15.09	18.84
CDY24692	Canola	plastid	14.45	18.75
CDY41990	Canola	plastid	14.13	18.68
CDY64953	Canola	cytosol	8.67	18.56
CDY42639	Canola	plastid	14.29	18.43
CDY05264	Canola	plastid	14.45	18.37
CDX85360	Canola	plastid	14.45	17.82
CDX86283	Canola	plastid	14.45	17.72
CDY52317	Canola	cytosol	0.48	17.65
CDY31603	Canola	plastid	17.82	16.74
CDX71562	Canola	mitochondrion, plastid	18.14	16.17
CDX74617	Canola	mitochondrion	8.83	15.67
CDX98345	Canola	cytosol	7.7	15.43
CDY29249	Canola	plastid	20.22	15.42
CDY32056	Canola	plastid	19.9	15.33
CDY56509	Canola	plastid	20.06	15.28
CDY19091	Canola	cytosol	16.21	13.85
CDY45398	Canola	plastid	19.1	13.77
CDX73117	Canola	plastid	18.94	13.67
CDY23832	Canola	plastid	16.69	12.71
CDX79920	Canola	cytosol, plastid	16.53	12.61
CDY10802	Canola	plastid	16.37	12.01
CDY15384	Canola	cytosol	8.19	11.97
CDY56616	Canola	plastid	14.29	11.28

Protein Annotations

EnsemblPlants:CDY31666	EnsemblPlantsGene:GSBRNA2T00050276001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF421
PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	ProteinID:CDY31666	ProteinID:CDY31666.1	SEG:seg
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	UniParc:UPI0004EEDD3E	UniProt:A0A078H1K8	MapMan:1.1.8.1.6.1	:

Description

BnaA05g08810DBnaA05g08810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H1K8]

Coordinates

chrLK032277:-:216511..219669

Molecular Weight (calculated)

70628.9 Da

IEP (calculated)

8.478

GRAVY (calculated)

-0.198

Length

623 amino acids

Sequence
(BLAST)

001: MKMKVKTFTK GEEYISIYIQ QHYSKAHHIS LVMLVAGNAL NCLFIDTSSF QRYLRFGVTH FNGGGVVKSC RKEGFVIDER GKLKRFNKKK LSRRRCGSLR
101: GRGWKYGSGF VDGIFPVLSP IAQKILSFIQ RETDPEKVAD VLGTLPSTHA SWDDLINVAV QLRLNKKWDP IVLVCEWILT RSSFQPDVIC FNLLIDAYGQ
201: KLRYKEAELL YVQLLESRCV PTEDTYALLV KAYCLAGLIE KAEAVLIEMQ NHHVTPSATV YNAYIEGLTK RKGNTEEAIV VFQRMKRERC KPTTETYNLM
301: INLYGKASRS YMSWKLFCEM RSHQCKPNIC TYTALVNAFA REGLCQKAEE VFEQLQEDGL EPDVYVYNAL MEAYSRAGYP YGAAEIFSLM QHMGCEPDRA
401: SYNIMVDAYG RAGLHSDAEA VFEQMKKLGI SPTMKSHMLL LSAYSRARDV TKCEAIVKEM SENGVEPDTF VLNSMLNLYG RLGQFTKMEK ILAEMMQNGP
501: CKADISTYNI LINVYGKAGY LERVEELFDE VKERKLRPDV VTWTSRMGGY SRKKLYVKCV EIFEEMIDSG CVPDGGTAKV LLKACASEEQ VEQVTEVIRT
601: MHKNVSVSSL APKLVAKSLT VST

Best Arabidopsis Sequence Match ( AT2G35130.3 )
(BLAST)

001: MLVAGNALNC LFIDSSGFQR YLGFGVTNLN GATVKSYKQE GFVIDERGKL KRFNRKKLSR KRCGSLRGRG WKYGSGFVDG IFPVLSPIAQ KILSFIQKET
101: DPDKVADVLG ALPSTHASWD DLINVSVQLR LNKKWDSIIL VCEWILRKSS FQPDVICFNL LIDAYGQKFQ YKEAESLYVQ LLESRYVPTE DTYALLIKAY
201: CMAGLIERAE VVLVEMQNHH VSPSVTVYNA YIEGLMKRKG NTEEAIDVFQ RMKRDRCKPT TETYNLMINL YGKASKSYMS WKLYCEMRSH QCKPNICTYT
301: ALVNAFAREG LCEKAEEIFE QLQEDGLEPD VYVYNALMES YSRAGYPYGA AEIFSLMQHM GCEPDRASYN IMVDAYGRAG LHSDAEAVFE EMKRLGIAPT
401: MKSHMLLLSA YSKARDVTKC EAIVKEMSEN GVEPDTFVLN SMLNLYGRLG QFTKMEKILA EMENGPCTAD ISTYNILINI YGKAGFLERI EELFVELKEK
501: NFRPDVVTWT SRIGAYSRKK LYVKCLEVFE EMIDSGCAPD GGTAKVLLSA CSSEEQVEQV TSVLRTMHKG VTVSSLVPKL MAKSLTVN

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IJS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.