Factsheet for PGSC0003DMT400027006

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g068760.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	96.53	89.25
VIT_01s0011g01970.t01	Wine grape	cytosol	74.65	73.88
KRG90712	Soybean	cytosol, endoplasmic reticulum, plastid	71.18	65.6
GSMUA_Achr7P03530_001	Banana	cytosol	65.62	64.18
AT2G35130.2	Thale cress	endoplasmic reticulum, golgi	64.93	61.01
Os02t0170000-02	Rice	cytosol	49.48	60.77
CDY31666	Canola	cytosol	64.24	59.39
CDX84260	Canola	cytosol, nucleus, plastid	65.1	58.32
OQU84443	Sorghum	cytosol	59.9	57.02
Zm00001d015377_P003	Maize	plastid	57.64	55.61
HORVU6Hr1G032270.20	Barley	cytosol, mitochondrion	55.38	49.46
Bra005366.1-P	Field mustard	cytosol, mitochondrion, nucleus	62.5	47.37
TraesCS6D01G147800.2	Wheat	cytosol, mitochondrion	44.1	42.83
TraesCS6B01G186300.2	Wheat	cytosol, mitochondrion	45.14	41.47
TraesCS6A01G163600.2	Wheat	nucleus	44.79	40.89
PGSC0003DMT400008123	Potato	cytosol, plastid	18.06	22.66
PGSC0003DMT400033331	Potato	plastid	17.19	20.75
PGSC0003DMT400022191	Potato	plastid	17.36	19.96
PGSC0003DMT400011734	Potato	plastid	17.01	19.8
PGSC0003DMT400082022	Potato	plastid	16.32	19.26
PGSC0003DMT400041148	Potato	plastid	18.75	18.88
PGSC0003DMT400066525	Potato	plastid	22.4	15.67
PGSC0003DMT400010473	Potato	plastid	22.05	15.08
PGSC0003DMT400030453	Potato	mitochondrion	18.23	15.06
PGSC0003DMT400018827	Potato	cytosol	19.62	14.95
PGSC0003DMT400060882	Potato	mitochondrion	13.72	14.52
PGSC0003DMT400063174	Potato	plastid	21.35	14.3

Protein Annotations

MapMan:1.1.8.1.6.1	Gene3D:1.25.40.10	EntrezGene:102590177	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	UniProt:M1AP11	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812
PFAM:PF17177	EnsemblPlantsGene:PGSC0003DMG400010422	PGSC:PGSC0003DMG400010422	EnsemblPlants:PGSC0003DMT400027006	InterPro:PPR_long	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF421	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI000294C5C9	RefSeq:XP_006365038.1	:	:	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010422]

Coordinates

chr2:-:27609963..27614224

Molecular Weight (calculated)

65556.3 Da

IEP (calculated)

7.954

GRAVY (calculated)

-0.241

Length

576 amino acids

Sequence
(BLAST)

001: MLVSKCPLNY ILYEPRISKG GFRWKASASN EVPVEKWKQD SIFIDRRGRF RHFDHKKVSR KRCGSLRGRG WKYGSGFVDG IFPVLSPIAQ QILTFIKTEK
101: DPERIWSSLD TLRPNNHTWD DLINVAVQFR LNKQWDLIIL MCEWILCRSS FQADVICYNL LIEAYGQCSL VKKAESTYLA LVDARCVPTE DTYAILLKSY
201: SKCGMIEKAE AVFSEMRKNG LPPSALVYNA YIDGLMKGRN SQKALAIFDR MKRESCQPST DTYTMLINLY GKENKSYMAL KMFNEMKTQK CKPNICTYTA
301: LVNAFARSGL CEKAEEVFEE LQEAGLEPDV YTYNALMEAY SRAGYPQGAA EIFSLMQHMG CEPDRASYNI MVDAYGRAGL HEDAQTVFDE MTRLGIAPTM
401: KSYMLLISAY SRNSNVSKCE EIVNQMQISG VKLDTFLLNS MLNLYGRLGQ FAKMEELLTV IEAGPYIADI STYNILINAY GRSGFIMKME EVFQSLPAKN
501: LKPDVVTWTS RLGAYSKKKQ YQRCLEIFEE MIDEGCYPDG GTAKVLLSSC SSEDQIEQVT TVIRSMHKNV KTVELV

Best Arabidopsis Sequence Match ( AT2G35130.3 )
(BLAST)

001: MLVAGNALNC LFIDSSGFQR YLGFGVTNLN GATVKSYKQE GFVIDERGKL KRFNRKKLSR KRCGSLRGRG WKYGSGFVDG IFPVLSPIAQ KILSFIQKET
101: DPDKVADVLG ALPSTHASWD DLINVSVQLR LNKKWDSIIL VCEWILRKSS FQPDVICFNL LIDAYGQKFQ YKEAESLYVQ LLESRYVPTE DTYALLIKAY
201: CMAGLIERAE VVLVEMQNHH VSPSVTVYNA YIEGLMKRKG NTEEAIDVFQ RMKRDRCKPT TETYNLMINL YGKASKSYMS WKLYCEMRSH QCKPNICTYT
301: ALVNAFAREG LCEKAEEIFE QLQEDGLEPD VYVYNALMES YSRAGYPYGA AEIFSLMQHM GCEPDRASYN IMVDAYGRAG LHSDAEAVFE EMKRLGIAPT
401: MKSHMLLLSA YSKARDVTKC EAIVKEMSEN GVEPDTFVLN SMLNLYGRLG QFTKMEKILA EMENGPCTAD ISTYNILINI YGKAGFLERI EELFVELKEK
501: NFRPDVVTWT SRIGAYSRKK LYVKCLEVFE EMIDSGCAPD GGTAKVLLSA CSSEEQVEQV TSVLRTMHKG VTVSSLVPKL MAKSLTVN

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IJS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.