Factsheet for PGSC0003DMT400066525

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 2
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g107320.2.1	Tomato	plastid	96.84	97.31
CDX71198	Canola	cytosol	50.91	74.03
VIT_03s0091g00440.t01	Wine grape	plastid	70.96	72.01
KRH27571	Soybean	plastid	46.17	70.37
GSMUA_Achr6P16830_001	Banana	cytosol	47.39	69.39
CDY32056	Canola	plastid	66.59	67.74
Bra035290.1-P	Field mustard	plastid	65.13	67.0
KRG91073	Soybean	plastid	64.03	66.37
AT5G02860.2	Thale cress	plastid	65.86	66.18
TraesCS2A01G194800.1	Wheat	endoplasmic reticulum, extracellular	33.66	59.57
HORVU2Hr1G035060.2	Barley	cytosol	43.01	56.64
Os07t0590600-00	Rice	plastid	49.33	51.79
KXG36606	Sorghum	plastid	48.36	51.49
Zm00001d022003_P001	Maize	plastid	48.24	49.94
TraesCS2D01G193100.1	Wheat	plastid	47.63	49.43
TraesCS2B01G212000.1	Wheat	plastid	47.63	49.31
PGSC0003DMT400010473	Potato	plastid	36.21	35.39
PGSC0003DMT400022191	Potato	plastid	13.97	22.95
PGSC0003DMT400008123	Potato	cytosol, plastid	12.76	22.88
PGSC0003DMT400027006	Potato	cytosol, plastid	15.67	22.4
PGSC0003DMT400018827	Potato	cytosol	20.41	22.22
PGSC0003DMT400082022	Potato	plastid	13.12	22.13
PGSC0003DMT400011734	Potato	plastid	12.76	21.21
PGSC0003DMT400060882	Potato	mitochondrion	13.97	21.14
PGSC0003DMT400030453	Potato	mitochondrion	17.74	20.95
PGSC0003DMT400033331	Potato	plastid	11.79	20.34
PGSC0003DMT400063174	Potato	plastid	21.14	20.23
PGSC0003DMT400041148	Potato	plastid	13.61	19.58

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102593457	MapMan:16.12.4.3	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	UniProt:M1CFP0	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041
PFAM:PF13812	EnsemblPlantsGene:PGSC0003DMG400025851	PGSC:PGSC0003DMG400025851	EnsemblPlants:PGSC0003DMT400066525	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF308	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000295845D	RefSeq:XP_006346330.1
SEG:seg	:	:	:	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025851]

Coordinates

chr1:-:83789152..83791937

Molecular Weight (calculated)

93029.2 Da

IEP (calculated)

8.284

GRAVY (calculated)

-0.237

Length

823 amino acids

Sequence
(BLAST)

001: MADKLGFPLL LPNPPPSKSI FQDFTVSSNQ PFAPFLNDLF HHQNPNTSPN FPSTSTQSPQ IPQSINFPSP IPRTRRRIIG RDNDSNRGKP WNPHRLSPQG
101: EKILQTLIGP EFHVDNIHQM LLSLYTVHRL EGSELDTESL SFDILGIIKG LGYYKKIDLA FNVFEWVRNR PNSGVLLNGS VIAVVISMLG KEGRVSVASS
201: LLHNLHKDGF GIDVYAYTSL ITAFARNGRY RDAVMVYKKM EEEGCQPTLI TYNVILNVYG KMGMPWSRIS AVFEGMKNSG VVPDAYTYNT LITCCRRGSL
301: YEEARQIFEE MKLGGFLPDK VTYNALLDVY GRSRRPKEAM EVLREMEVHG FSPSIVTYNS LVSAYARDGL MEEAMELKAK MIDKGIKPDV FTYTTLFSGF
401: EKAGKDESAM RVFEEMTSAG CKPNICTFNA LIKMYGNRGK FTEMMKVFDD IRTFGCSPDI VTWNTLLAVF GQNGMDSEVT GVFKEMKRAG FVAERDTFNT
501: LIGAYSRCGA FDQAMVIYRR MLDAGVTPDL STYNAVLAAL ARGGLWEQSE KVLAEMKDGR CKPNELTYSS LLHAYANGKE IDRIHSLAEE IYSSVIQPHV
601: VLLKTLVLVY SKSDLLVETE QAFFELRSRG FSPDITTLNA MLSIYGRKQM VTKAAEIMNF MNDTGYTPSL TTYNSLMYMY SRSSNYEKSE QLLMEIIAKG
701: VRPDVISYNT VIYAYCRNGR MRDASRIFTE MKESGIVPDV ITYNTFVSRY AADAMFIDAI EVVRYMIKQG CKPNDSTYNS IIDSYCKLNR RDEALAFINN
801: LRKLNPHVSK EEETRLSARL MKK

Best Arabidopsis Sequence Match ( AT5G02860.3 )
(BLAST)

001: MADKLALPLL LPCTPSSKPY SHDQNHHISR TPFLTTSLSS PPPPPVEPLL HDVFLHQNPN SRQPISSQTS RNRNRTRIGK SRDPNLGKPW SYHGLSPQGQ
101: QVLRSLIEPN FDSGQLDSVL SELFEPFKDK PESTSSELLA FLKGLGFHKK FDLALRAFDW FMKQKDYQSM LDNSVVAIII SMLGKEGRVS SAANMFNGLQ
201: EDGFSLDVYS YTSLISAFAN SGRYREAVNV FKKMEEDGCK PTLITYNVIL NVFGKMGTPW NKITSLVEKM KSDGIAPDAY TYNTLITCCK RGSLHQEAAQ
301: VFEEMKAAGF SYDKVTYNAL LDVYGKSHRP KEAMKVLNEM VLNGFSPSIV TYNSLISAYA RDGMLDEAME LKNQMAEKGT KPDVFTYTTL LSGFERAGKV
401: ESAMSIFEEM RNAGCKPNIC TFNAFIKMYG NRGKFTEMMK IFDEINVCGL SPDIVTWNTL LAVFGQNGMD SEVSGVFKEM KRAGFVPERE TFNTLISAYS
501: RCGSFEQAMT VYRRMLDAGV TPDLSTYNTV LAALARGGMW EQSEKVLAEM EDGRCKPNEL TYCSLLHAYA NGKEIGLMHS LAEEVYSGVI EPRAVLLKTL
601: VLVCSKCDLL PEAERAFSEL KERGFSPDIT TLNSMVSIYG RRQMVAKANG VLDYMKERGF TPSMATYNSL MYMHSRSADF GKSEEILREI LAKGIKPDII
701: SYNTVIYAYC RNTRMRDASR IFSEMRNSGI VPDVITYNTF IGSYAADSMF EEAIGVVRYM IKHGCRPNQN TYNSIVDGYC KLNRKDEAKL FVEDLRNLDP
801: HAPKGEDLRL LERIVKKWP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g02860 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYZ9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.