Factsheet for PGSC0003DMT400030453

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g045850.2.1	Tomato	nucleus	96.7	96.42
VIT_18s0122g01380.t01	Wine grape	cytosol, mitochondrion, plastid	74.75	74.96
KRH51622	Soybean	cytosol, plastid	69.44	69.54
CDY31603	Canola	plastid	65.71	69.08
Bra017881.1-P	Field mustard	plastid	67.72	67.43
AT5G42310.1	Thale cress	plastid	68.44	67.28
CDX71562	Canola	mitochondrion, plastid	67.29	67.1
KRH60945	Soybean	plastid	65.57	67.01
GSMUA_Achr9P12090_001	Banana	mitochondrion	58.68	59.45
TraesCS2B01G238300.1	Wheat	plastid	51.22	53.36
HORVU2Hr1G043170.1	Barley	mitochondrion	50.36	53.1
EER99505	Sorghum	plastid	50.79	52.99
Zm00001d021716_P001	Maize	plastid	50.07	52.25
Os07t0548300-01	Rice	plastid	46.05	49.77
PGSC0003DMT400060882	Potato	mitochondrion	23.82	30.51
PGSC0003DMT400008123	Potato	cytosol, plastid	14.2	21.57
PGSC0003DMT400082022	Potato	plastid	14.49	20.7
PGSC0003DMT400033331	Potato	plastid	13.77	20.13
PGSC0003DMT400027006	Potato	cytosol, plastid	15.06	18.23
PGSC0003DMT400022191	Potato	plastid	13.06	18.16
PGSC0003DMT400010473	Potato	plastid	21.66	17.93
PGSC0003DMT400011734	Potato	plastid	12.63	17.78
PGSC0003DMT400066525	Potato	plastid	20.95	17.74
PGSC0003DMT400041148	Potato	plastid	14.49	17.66
PGSC0003DMT400018827	Potato	cytosol	17.93	16.53
PGSC0003DMT400063174	Potato	plastid	18.94	15.35

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102595862	MapMan:16.12.4.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003727	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009579	GO:GO:0009658	GO:GO:0009987	GO:GO:0010239	GO:GO:0016020
GO:GO:0016043	GO:GO:0042644	GO:GO:0042651	InterPro:IPR002885	InterPro:IPR011990	UniProt:M1AUA1
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	EnsemblPlantsGene:PGSC0003DMG400011663	PGSC:PGSC0003DMG400011663	EnsemblPlants:PGSC0003DMT400030453
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF788	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI00029674A5	RefSeq:XP_006346695.1	SEG:seg	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011663]

Coordinates

chr8:-:25465354..25469404

Molecular Weight (calculated)

79086.9 Da

IEP (calculated)

6.463

GRAVY (calculated)

-0.304

Length

697 amino acids

Sequence
(BLAST)

001: MVGLSLPSTF TGTCWRRRRR MNTLLLPPPS QLPYQFRRRH QILGQHSSTS HLSISNQFNI EEEEEDEEYH IGSYSNQRYD FTPLLQFLST TEPNSDNSSP
101: TQLHPTELRL AESYRAVPAP LWHSLLKGLS STPSSISIAY ALVIWLQKHN LCFSYELLYS ILIHALGRSE KLYEAFLLSQ RQTLTPLTYN ALIGACARNG
201: DLEKALNLMC RMRRDGYQSD YVNYSLIIQS LIRSNSIDLT MLHKFCYEIE ADMIELDGQL LNDMIVGFAK AGDVDRALGF MSIVQGNGLS PKTATVVNLI
301: SELGNSGRTE EAEAIFEELK EGGLKPRTRA FNALLKGYVK TGSLKDAEYI VSEMESSGVA PDEHTYSLLI DAYGNAGRWE SARIVLKEME ANNVQPNSFV
401: FSRILASYRD RGEWQRSFQV LKEMKNSGVN PDRQFYNIMI DTFGKYNCLD HAMSTFERMK LEEIEPDTVT WNTLIDCHSK HGHHNKAEEL FETMQESGCS
501: PCTTTYNIMI NSFGELEKWE EVKCLLSKMQ SQGLLPNVVT YTTLINIYGQ SGRFNDAIEC LEVMKSAGLK PSSTMYNALI NAYAQRGLSE QAVNAFRIMK
601: GDGLKPSLLA LNSLINAFGE DRRDAEAFAV LKYLKENDMK PDVVTYTTLM KTLIRVEKFE RVPAVYEEML LCGCIPDRKA RAMLRSALRY MKSTLKL

Best Arabidopsis Sequence Match ( AT5G42310.1 )
(BLAST)

001: MLLLQQPPLV STRFHSLYFL THHHHHHHRF FQPPISAFSA TTSASLPSPS PSSSSSYFSS WNGLDTNEEE DNEFSSEVHR RYDFSPLLKF LSRFGPVELA
101: LDSESESEAS PESLNPVEFD LVESYRAVPA PYWHSLIKSL TSSTSSLGLA YAVVSWLQKH NLCFSYELLY SILIHALGRS EKLYEAFLLS QKQTLTPLTY
201: NALIGACARN NDIEKALNLI AKMRQDGYQS DFVNYSLVIQ SLTRSNKIDS VMLLRLYKEI ERDKLELDVQ LVNDIIMGFA KSGDPSKALQ LLGMAQATGL
301: SAKTATLVSI ISALADSGRT LEAEALFEEL RQSGIKPRTR AYNALLKGYV KTGPLKDAES MVSEMEKRGV SPDEHTYSLL IDAYVNAGRW ESARIVLKEM
401: EAGDVQPNSF VFSRLLAGFR DRGEWQKTFQ VLKEMKSIGV KPDRQFYNVV IDTFGKFNCL DHAMTTFDRM LSEGIEPDRV TWNTLIDCHC KHGRHIVAEE
501: MFEAMERRGC LPCATTYNIM INSYGDQERW DDMKRLLGKM KSQGILPNVV THTTLVDVYG KSGRFNDAIE CLEEMKSVGL KPSSTMYNAL INAYAQRGLS
601: EQAVNAFRVM TSDGLKPSLL ALNSLINAFG EDRRDAEAFA VLQYMKENGV KPDVVTYTTL MKALIRVDKF QKVPVVYEEM IMSGCKPDRK ARSMLRSALR
701: YMKQTLRAS

Arabidopsis Description

CRP1Pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L844]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.