Factsheet for Bra017881.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31603	Canola	plastid	94.29	99.55
AT5G42310.1	Thale cress	plastid	89.86	88.72
VIT_18s0122g01380.t01	Wine grape	cytosol, mitochondrion, plastid	69.86	70.36
KRH51622	Soybean	cytosol, plastid	68.29	68.68
PGSC0003DMT400030453	Potato	mitochondrion	67.43	67.72
Solyc08g045850.2.1	Tomato	nucleus	67.0	67.1
KRH60945	Soybean	plastid	65.0	66.72
GSMUA_Achr9P12090_001	Banana	mitochondrion	57.57	58.58
HORVU2Hr1G043170.1	Barley	mitochondrion	50.43	53.4
EER99505	Sorghum	plastid	50.71	53.14
TraesCS2B01G238300.1	Wheat	plastid	50.57	52.91
Zm00001d021716_P001	Maize	plastid	50.14	52.54
Os07t0548300-01	Rice	plastid	45.57	49.46
Bra035352.1-P	Field mustard	mitochondrion	23.29	33.82
Bra006974.1-P	Field mustard	cytosol, endoplasmic reticulum	15.29	21.44
Bra024454.1-P	Field mustard	plastid	22.43	19.22
Bra035290.1-P	Field mustard	plastid	21.86	19.12
Bra020748.1-P	Field mustard	plastid	13.0	18.53
Bra011847.1-P	Field mustard	plastid	12.71	18.31
Bra018246.1-P	Field mustard	plastid	12.57	17.81
Bra037464.1-P	Field mustard	plastid	13.14	17.2
Bra019526.1-P	Field mustard	cytosol	6.43	17.05
Bra004642.1-P	Field mustard	cytosol, plastid	19.14	16.38
Bra015889.1-P	Field mustard	plastid	18.43	14.93
Bra005366.1-P	Field mustard	cytosol, mitochondrion, nucleus	16.0	14.74
Bra021733.1-P	Field mustard	cytosol	18.57	11.84
Bra018247.1-P	Field mustard	nucleus	4.71	10.89

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.12.4.2	EnsemblPlantsGene:Bra017881	EnsemblPlants:Bra017881.1	EnsemblPlants:Bra017881.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003727	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009658	GO:GO:0009987
GO:GO:0010239	GO:GO:0016020	GO:GO:0016043	GO:GO:0042644	GO:GO:0042651	InterPro:IPR002885
InterPro:IPR011990	UniProt:M4DMZ4	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF788	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002540DD4
SEG:seg	:	:	:	:	:

Description

AT5G42310 (E=0.0) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA03:-:31227608..31229937

Molecular Weight (calculated)

79088.1 Da

IEP (calculated)

7.509

GRAVY (calculated)

-0.241

Length

700 amino acids

Sequence
(BLAST)

001: MLLMQPPLVS SRFHSLYYIP RRHHRFFQRP ISAFSATASC SPSSYFSSWN GLDASEKEEE EEEELSTLVR RRYDFSPLLK FLSRFGPVEL VLDSVNLEPL
101: PAVSLDPVEF ELAESYKAVP APYWHSLLKS LCSSRSSLGL AYAVVSWLER HNLCFSYELL YSILIHALGR SEKLYEAFLL SQKQTLTPLT YNALIGACAR
201: NNDIDKALNL ISRMRQDGYQ SDFVNYSLVI QALTRSNKID SALLQSLYRE IKHDKLELDV QLVNDLIMGF AKSGDPSRAM QLLGMAQSTG LSAKTATLVS
301: IISALANSGR TLEAEALFEE LRQSGIKPRT KAYNALLRGY VKTGPLRDAE SMVSEMEKSG VSPDEHTYSL LIDAYVNAGR WESARIVLQE MEAGDVQPNS
401: FVFSRLLAGY RDRGEWQKTF QVLKEMKSIG VKPDRQFYNV VIDTFGKFNC LDHAMSTFDR MLSEGIEPDR VTWNTLIDCH CKHGRHIVAQ EMFESMEKRG
501: CLPCATTYNI MINSYGDQER WDDMKRLLGK MKSQGVLPNV VTHTTLVDVY GKSGRFNDAI DCLEEMKSVG LKPSSTMYNA LINAYAQRGL SEQAVNAFRV
601: MTSDGLKPSL LALNSLINAF GEDRRDAEAF AVLQYMKENG VNPDVVTYTT LMKALIRVDK FQQVPGVYEE MIMSGCKPDR KARSMLRSAL RYMKQTLRAS

Best Arabidopsis Sequence Match ( AT5G42310.1 )
(BLAST)

001: MLLLQQPPLV STRFHSLYFL THHHHHHHRF FQPPISAFSA TTSASLPSPS PSSSSSYFSS WNGLDTNEEE DNEFSSEVHR RYDFSPLLKF LSRFGPVELA
101: LDSESESEAS PESLNPVEFD LVESYRAVPA PYWHSLIKSL TSSTSSLGLA YAVVSWLQKH NLCFSYELLY SILIHALGRS EKLYEAFLLS QKQTLTPLTY
201: NALIGACARN NDIEKALNLI AKMRQDGYQS DFVNYSLVIQ SLTRSNKIDS VMLLRLYKEI ERDKLELDVQ LVNDIIMGFA KSGDPSKALQ LLGMAQATGL
301: SAKTATLVSI ISALADSGRT LEAEALFEEL RQSGIKPRTR AYNALLKGYV KTGPLKDAES MVSEMEKRGV SPDEHTYSLL IDAYVNAGRW ESARIVLKEM
401: EAGDVQPNSF VFSRLLAGFR DRGEWQKTFQ VLKEMKSIGV KPDRQFYNVV IDTFGKFNCL DHAMTTFDRM LSEGIEPDRV TWNTLIDCHC KHGRHIVAEE
501: MFEAMERRGC LPCATTYNIM INSYGDQERW DDMKRLLGKM KSQGILPNVV THTTLVDVYG KSGRFNDAIE CLEEMKSVGL KPSSTMYNAL INAYAQRGLS
601: EQAVNAFRVM TSDGLKPSLL ALNSLINAFG EDRRDAEAFA VLQYMKENGV KPDVVTYTTL MKALIRVDKF QKVPVVYEEM IMSGCKPDRK ARSMLRSALR
701: YMKQTLRAS

Arabidopsis Description

CRP1Pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L844]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.