Factsheet for Bra020748.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001873.1-P
Bra002831.1-P
Bra005907.1-P
Bra009219.1-P
Bra009226.1-P
Bra012964.1-P
Bra013872.1-P
Bra017489.1-P
Bra021534.1-P
Bra021536.1-P
Bra023148.1-P
Bra023820.1-P
Bra024948.1-P
Bra025523.1-P
Bra028941.1-P
Bra032176.1-P
Bra035611.1-P
Bra035933.1-P
Bra039871.1-P
Bra039962.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06430.1	Bra023148.1-P	AT1G30860.1	21798944
AT3G06430.1	Bra039871.1-P	AT1G30860.1	21798944
AT3G06430.1	Bra032176.1-P	AT2G23290.1	21798944
AT3G06430.1	Bra021534.1-P	AT3G14180.1	21798944
AT3G06430.1	Bra021536.1-P	AT3G14180.1	21798944
AT3G06430.1	Bra001873.1-P	AT3G22550.1	21798944
AT3G06430.1	Bra023820.1-P	AT3G22550.1	21798944
AT3G06430.1	Bra039962.1-P	AT3G22550.1	21798944
AT3G06430.1	Bra013872.1-P	AT4G25200.1	21798944
AT3G06430.1	Bra005907.1-P	AT5G06710.1	21798944
AT3G06430.1	Bra009219.1-P	AT5G06710.1	21798944
AT3G06430.1	Bra009226.1-P	AT5G06780.1	21798944
AT3G06430.1	Bra025523.1-P	AT5G41070.1	21798944
AT3G06430.1	Bra017489.1-P	AT5G47370.1	21798944
AT3G06430.1	Bra024948.1-P	AT5G47370.1	21798944
AT3G06430.1	Bra002831.1-P	AT5G56250.1	21798944
AT3G06430.1	Bra028941.1-P	AT5G56250.1	21798944
AT3G06430.1	Bra035611.1-P	AT5G56250.1	21798944
AT3G06430.1	Bra012964.1-P	AT5G61380.1	21798944
AT3G06430.1	Bra035933.1-P	AT5G61380.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24692	Canola	plastid	96.74	98.96
AT3G06430.1	Thale cress	plastid	88.59	89.51
VIT_05s0020g00690.t01	Wine grape	plastid	73.52	72.49
KRH02451	Soybean	plastid	69.45	69.88
KRH02371	Soybean	plastid	69.25	69.67
PGSC0003DMT400011734	Potato	plastid	64.97	64.44
Solyc12g098990.1.1	Tomato	plastid	64.56	64.04
PGSC0003DMT400022191	Potato	plastid	63.75	62.48
GSMUA_Achr11P...	Banana	plastid	67.82	61.33
Solyc01g057200.2.1	Tomato	plastid	58.45	61.06
Os03t0309800-02	Rice	plastid	59.06	57.88
KRH37687	Soybean	plastid	54.38	55.05
TraesCS4B01G138200.1	Wheat	cytosol, mitochondrion, plastid	58.45	54.46
TraesCS4A01G178100.5	Wheat	plastid	59.06	53.6
TraesCS4D01G132900.3	Wheat	plastid	59.06	53.6
EER97871	Sorghum	plastid	61.1	53.57
Zm00001d018693_P001	Maize	plastid	59.47	51.14
HORVU4Hr1G024360.2	Barley	endoplasmic reticulum, vacuole	58.45	49.65
Bra006974.1-P	Field mustard	cytosol, endoplasmic reticulum	33.6	33.07
Bra037464.1-P	Field mustard	plastid	35.23	32.34
Bra011847.1-P	Field mustard	plastid	21.79	22.02
Bra019526.1-P	Field mustard	cytosol	7.74	14.39
Bra035352.1-P	Field mustard	mitochondrion	13.44	13.69
Bra035290.1-P	Field mustard	plastid	21.79	13.38
Bra017881.1-P	Field mustard	plastid	18.53	13.0
Bra024454.1-P	Field mustard	plastid	19.96	12.0
Bra005366.1-P	Field mustard	cytosol, mitochondrion, nucleus	17.72	11.45
Bra004642.1-P	Field mustard	cytosol, plastid	17.92	10.76
Bra015889.1-P	Field mustard	plastid	17.31	9.84
Bra018246.1-P	Field mustard	plastid	9.78	9.72
Bra021733.1-P	Field mustard	cytosol	15.07	6.74
Bra018247.1-P	Field mustard	nucleus	3.05	4.95

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra020748	EnsemblPlants:Bra020748.1	EnsemblPlants:Bra020748.1-P	GO:GO:0000003
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0007275	GO:GO:0008150	GO:GO:0009507
GO:GO:0009536	GO:GO:0009553	GO:GO:0009555	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
GO:GO:0009856	GO:GO:0019843	GO:GO:0048868	InterPro:IPR002885	InterPro:IPR011990	UniProt:M4DW54
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF301	InterPro:Pentatricopeptide_repeat
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002545F6B	SEG:seg	:	:

Description

AT3G06430 (E=2e-235) EMB2750 | EMB2750 (embryo defective 2750)

Coordinates

chrA02:-:23305674..23307296

Molecular Weight (calculated)

56154.5 Da

IEP (calculated)

7.038

GRAVY (calculated)

-0.425

Length

491 amino acids

Sequence
(BLAST)

001: MASMSLSFSS SLCSSRLPES KRRFHQREPT FARCVLAASK SSPGGGGATA TTKKRLWKEG EFPGITEHAN TRRAPMKNVK KKLDRRSKAN GWACTVTETL
101: SDLIAKKQWL QALEVFEMLR EQPFYQPKEG TYMKLLVLLG KSGQPHRAQK VFDEMLEEGL EPTAELYTAL LGAYCRSNLI DSAFSVLERM KTLPQCQPDV
201: YTYSTLLKAC VDASLFDLVE SLYREMDERL ITPNTVTQNI VLSGYGRVGR FDQMEKVLSD MLVSTECKPD VWTMNIILSV FGNMGKIDMM ESWYEKFRNF
301: GIEPETRSFN ILIGAYGKKR MYDKMSSVME YMRKLEFPWT TSTYNNIIEA FADVGDAKNM EYTFDQMRSE GMKADTKTFC CLINGYANAG LFHKVISSVQ
401: LAAKFEIPEN TSFYNAVISA CAKADDLIEM ERVYTRMKER ECVRDSRTFE IMVEAYEKEG MNDKIYYLEQ ERQKVMDHHA AATKEEENLP G

Best Arabidopsis Sequence Match ( AT3G06430.1 )
(BLAST)

001: MASMSLSFSS SLCSSRIPEG KRRFRHRDVG IVRCVLAASK SSPGSVTKKR LWKDGEFPGI TEPVNQRRTP IKNVKKKLDR RSKANGWVNT VTETLSDLIA
101: KKQWLQALEV FDMLREQTFY QPKEGTYMKL LVLLGKSGQP NRAQKLFDEM LEEGLEPTVE LYTALLAAYT RSNLIDDAFS ILDKMKSFPQ CQPDVFTYST
201: LLKACVDASQ FDLVDSLYKE MDERLITPNT VTQNIVLSGY GRVGRFDQME KVLSDMLVST ACKPDVWTMN IILSVFGNMG KIDMMESWYE KFRNFGIEPE
301: TRTFNILIGS YGKKRMYDKM SSVMEYMRKL EFPWTTSTYN NIIEAFADVG DAKNMELTFD QMRSEGMKAD TKTFCCLING YANAGLFHKV ISSVQLAAKF
401: EIPENTAFYN AVISACAKAD DLIEMERVYI RMKERQCVCD SRTFEIMVEA YEKEGMNDKI YYLEQERQKL MDRTVATKEM ENLPAG

Arabidopsis Description

EMB2750Pentatricopeptide repeat-containing protein At3g06430, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQU6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.