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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
iPSORT:plastid
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000066.1-P
Bra000147.1-P
Bra000304.1-P
Bra001412.1-P
Bra002404.1-P
Bra002437.1-P
Bra002438.1-P
Bra005103.1-P
Bra006033.1-P
Bra006620.1-P
Bra007528.1-P
Bra009081.1-P
Bra014334.1-P
Bra014494.1-P
Bra017053.1-P
Bra017461.1-P
Bra019993.1-P
Bra020223.1-P
Bra020224.1-P
Bra024895.1-P
Bra026274.1-P
Bra027160.1-P
Bra028615.1-P
Bra030798.1-P
Bra031421.1-P
Bra032645.1-P
Bra033247.1-P
Bra034827.1-P
Bra038591.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G30860.1 Bra032645.1-P AT1G01630.1 21798944
AT1G30860.1 Bra033247.1-P AT1G01630.1 21798944
AT1G30860.1 Bra019993.1-P AT1G09770.1 21798944
AT1G30860.1 Bra027160.1-P AT1G09770.1 21798944
AT1G30860.1 Bra030798.1-P AT1G09770.1 21798944
AT1G30860.1 Bra031421.1-P AT1G61590.1 21798944
AT1G30860.1 Bra038591.1-P AT1G61590.1 21798944
AT1G30860.1 Bra014334.1-P AT2G01250.1 21798944
AT1G30860.1 Bra017461.1-P AT2G01250.1 21798944
AT1G30860.1 Bra024895.1-P AT2G01250.1 21798944
AT1G30860.1 Bra000066.1-P AT2G38490.1 21798944
AT1G30860.1 Bra005103.1-P AT2G38490.1 21798944
AT1G30860.1 Bra000147.1-P AT2G39760.1 21798944
AT1G30860.1 Bra017053.1-P AT2G39760.1 21798944
AT1G30860.1 Bra000304.1-P AT2G43370.1 21798944
AT1G30860.1 Bra001412.1-P AT3G11590.1 21798944
AT1G30860.1 Bra034827.1-P AT3G11590.1 21798944
AT1G30860.1 Bra007528.1-P AT3G60360.1 21798944
AT1G30860.1 Bra014494.1-P AT3G60360.1 21798944
AT1G30860.1 Bra026274.1-P AT4G28230.1 21798944
AT1G30860.1 Bra006033.1-P AT5G09810.1 21798944
AT1G30860.1 Bra009081.1-P AT5G09810.1 21798944
AT1G30860.1 Bra028615.1-P AT5G09810.1 21798944
AT1G30860.1 Bra002404.1-P AT5G22310.1 21798944
AT1G30860.1 Bra006620.1-P AT5G22310.1 21798944
AT1G30860.1 Bra002437.1-P AT5G22890.1 21798944
AT1G30860.1 Bra002438.1-P AT5G22890.1 21798944
AT1G30860.1 Bra020223.1-P AT5G22890.1 21798944
AT1G30860.1 Bra020224.1-P AT5G22890.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY52188 Canola nucleus 85.47 87.59
AT1G30860.1 Thale cress cytosol 46.72 44.93
Bra023148.1-P Field mustard nucleus 43.73 43.55
Bra021939.1-P Field mustard nucleus, plastid 34.9 39.33
Bra005381.1-P Field mustard nucleus 34.62 37.5
VIT_01s0010g00340.t01 Wine grape nucleus 23.5 22.63
GSMUA_Achr4P33210_001 Banana nucleus 16.95 21.92
KRH37161 Soybean nucleus 28.77 21.91
KRH12155 Soybean nucleus 27.64 21.16
GSMUA_Achr7P00390_001 Banana nucleus 19.52 18.84
Solyc10g005220.2.1 Tomato nucleus, plastid 24.79 18.47
PGSC0003DMT400029374 Potato nucleus, plastid 25.21 17.95
PGSC0003DMT400035458 Potato nucleus 24.22 16.43
TraesCS2A01G229600.2 Wheat nucleus, plastid 17.09 16.24
TraesCS2B01G251300.1 Wheat nucleus, plastid 16.95 16.21
Solyc02g082100.2.1 Tomato vacuole 24.5 15.96
EER99396 Sorghum plastid 17.52 15.93
HORVU2Hr1G048520.1 Barley plastid 14.53 15.86
TraesCS2D01G233500.1 Wheat cytosol, plastid 17.09 15.85
Zm00001d021532_P001 Maize cytosol, plastid 17.24 15.65
Bra013447.1-P Field mustard nucleus 27.35 15.53
Os07t0499800-01 Rice nucleus 16.1 15.03
Zm00001d006417_P002 Maize plastid 12.54 14.99
Bra034121.1-P Field mustard nucleus 9.26 8.12
Bra029846.1-P Field mustard nucleus 8.83 8.02
Bra009452.1-P Field mustard nucleus 9.26 7.77
Bra011990.1-P Field mustard nucleus, plastid 7.98 7.33
Os03t0107500-00 Rice plasma membrane 1.99 3.84
Protein Annotations
EnsemblPlants:Bra039871.1EnsemblPlants:Bra039871.1-PEnsemblPlantsGene:Bra039871Gene3D:3.30.40.10InterPro:IPR001841InterPro:IPR013083
InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDncoils:CoilPANTHER:PTHR10044PANTHER:PTHR10044:SF103PFAM:PF13920
PFscan:PS50089SEG:segSUPFAM:SSF57850UniParc:UPI0002545826UniProt:M4FFJ7MapMan:35.2
Description
AT1G30860 (E=1e-112) | protein binding / zinc ion binding
Coordinates
chrA08:+:6149038..6151574
Molecular Weight (calculated)
80175.5 Da
IEP (calculated)
4.751
GRAVY (calculated)
-0.998
Length
702 amino acids
Sequence
(BLAST)
001: MASSQVEIPS PSQRFGFIHR DRSQTPIVYK KAPNHHHQPV SDENSQNLVD SWIQTLNKKK DNNKSTEKPI ALEKSDESNR NGASSLVQIW EARLLNRSTS
101: PSHNQSPVNS SRSDSGVSVQ DSRSSKSPSI ESEAEISDVE IESRSPGGSV SDSCRVADLI RRLSKEAKVI SGGGLSTIRT PRPCVSSWSS SEKSSFPMVT
201: PRIRGRQAFT DLLMHMERDR HRELDSLLER NAVSRFTQRG RLQSMLRLRN LKRCQAVQDQ NRSNSKSTGL NRIGSGGGSS VLHLRERFRA DVDKRKDNHF
301: MNKKTVEETE VTSDNKTMKN GGLTLEAFFK ERLSLPNPNL EKATLRKGEE TVNGTVGSKT NCLQLQETIE IEEVCCDDDD SDKKEEEKTS PSACVDQETQ
401: PQSVAPESIE VDQCLEQQET SYLNGWEDEE EYEEDEQSYY YGETNNDWLH EISRPRSYWE ELRKTRYLEV MNTRSEKEDI RRLLERGPVT DFLQSGLRDQ
501: IDRLMMSRVQ THSNKHSEKW ELQHEEEEEE HRNENVEETE EEEEEEEEEE EPFTEEGEEQ DDGDDSSSSP IFASSPAGSW SCQDTEVTST PVLSVHNPPS
601: PEMELISEMR TQIQQLQQEM SLLRDSVKTC LDTNASLVHR ENPMKRKCCV CDETQVEAVL YRCGHMCTCL KCANELHWSG GKCPICRAQI MDVVRVFFDT
701: RN
Best Arabidopsis Sequence Match ( AT1G30860.1 )
(BLAST)
001: MVSSPQRFGL ILRDRNQNAG VFQKNLKSPV KEVLKSHVSD ENLVDSWIET HNNKNNRVLE SPLESKRNDN LVASSLVQIW EARLNRSNGG NSPSSSQSTA
101: SSSSRSDSGV SVQDSGLSES SSIDGDSEIA DRTVEIESRS HGLVSDSGES KWGRVADLIR RLSNEDKKRT AGDNGSGGGG GLEIIRTPRP YCTSSSSEKS
201: NFPVVSFSPK IRGRQAFTDF LMQMERDRHR ELDSLFERNA VSRFTQRGRL QSMLRLRNLN RCLVIQDRNR SNAKTTGLNR IESGSAVLHL REKFHANVVN
301: SAAATDKRKN HQRSTEMNNK SVEETEGTTT TSTRLKDGGV TLEAFFAERL RPRNRKIEEA TLCKEEESVS GTVDSQKNCL QLQETREVEE TCNDGKSEKK
401: EEENTSPSEY LSRESRLRQN QDENNVGKYM QETRETEGLV HESNEMDQCL DQQETSYLNR WGEQEEYADE QSYYGEYNDD WLSEIARPRS YWEELRKSRY
501: LEVMNTRSEK DDICRLLERR TVTDFLDSGL REKIDNLMMS RVQTHSDKHS KKWELQQEEE EEVNFEIDEE IKEEPLRGGE EQDDRDDLSQ SSSSHISASS
601: PAGSWSSQDT DVTSTPALVV QNPQSPEMEL ISGMRSQIQQ LQQEMSVLRD SVKTCLDANA SLQHKAHQEN PMKRKCCVCD ETQVEAVLYR CGHMCMCLKC
701: ANELHWSGGK CPICRAQIVD VVRVIYDTRN
Arabidopsis Description
At1g30860 [Source:UniProtKB/TrEMBL;Acc:Q6NQ80]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.