Factsheet for Bra027160.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012753.1-P
Bra015322.1-P
Bra021297.1-P
Bra022288.1-P
Bra030575.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09770.1	Bra015322.1-P	AT1G04510.1	19629177
AT1G09770.1	Bra030575.1-P	AT1G04510.1	19629177
AT1G09770.1	Bra021297.1-P	AT3G18165.1	17575050
AT1G09770.1	Bra022288.1-P	AT3G18165.1	17575050
AT1G09770.1	Bra012753.1-P	AT4G15900.1	17575050

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53058	Canola	nucleus	99.58	99.58
Bra030798.1-P	Field mustard	nucleus	83.47	23.26
Bra019993.1-P	Field mustard	nucleus	83.05	23.22
AT1G09770.1	Thale cress	nucleus	83.05	23.22
Zm00001d042287_P001	Maize	extracellular, nucleus, plasma membrane	80.51	20.54
Os04t0348300-01	Rice	nucleus	80.08	19.44
KRG92639	Soybean	nucleus	79.24	19.42
KRH34143	Soybean	nucleus	78.81	19.33
KXG34025	Sorghum	nucleus	80.51	19.33
EES15997	Sorghum	nucleus	80.51	19.27
PGSC0003DMT400029953	Potato	nucleus	78.39	18.76
Solyc04g009950.2.1	Tomato	nucleus	78.39	18.74
TraesCS5D01G460800.1	Wheat	nucleus	79.66	18.56
TraesCS5B01G459200.1	Wheat	nucleus	79.66	18.38
TraesCS5A01G450800.1	Wheat	nucleus	79.66	18.32
HORVU5Hr1G108630.3	Barley	nucleus	79.66	17.77
TraesCS5D01G314000.1	Wheat	nucleus	79.66	17.75
HORVU5Hr1G080010.3	Barley	nucleus	79.66	17.57
TraesCS5A01G307100.1	Wheat	nucleus	79.66	17.39
TraesCS5B01G307500.2	Wheat	nucleus	79.66	17.34
GSMUA_Achr9P23340_001	Banana	nucleus	79.24	16.59
VIT_14s0036g00510.t01	Wine grape	nucleus	60.17	14.37

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	MapMan:15.5.2.2	MapMan:16.4.5.1.2	EnsemblPlantsGene:Bra027160	EnsemblPlants:Bra027160.1
EnsemblPlants:Bra027160.1-P	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf
InterPro:IPR017930	UniProt:M4EEE8	InterPro:Myb_dom	PFAM:PF13921	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF919	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000254273B	SEG:seg

Description

AT1G09770 (E=4e-100) ATCDC5, CDC5, ATMYBCDC5 | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5); DNA binding / transcription factor

Coordinates

chrA09:+:8862138..8862848

Molecular Weight (calculated)

26943.0 Da

IEP (calculated)

10.116

GRAVY (calculated)

-1.117

Length

236 amino acids

Sequence
(BLAST)

001: MRSMVKGGVW KNTEDEVLKA AMMKYGKNQW GRISSLSVRK SAKQCKARWN EWLDPSIKKT EWTREEDEKL LHLSKILPTQ WRTIAPAVGR TPSQCLERYE
101: KLLDASSCSK GYEAGGDPRK LRPGEIDPNP ESKPARPDQV DMEDDEMEML SEARARLANT RGKKAKRKAR EKQIQEARSL GSLQKRRELI AAGIDDGKRR
201: NRKGKGIDYS AEIAFEKRAP AGFYDTADED RHADNH

Best Arabidopsis Sequence Match ( AT1G09770.1 )
(BLAST)

001: MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT EWTREEDEKL LHLAKLLPTQ WRTIAPIVGR TPSQCLERYE
101: KLLDAACTKD ENYDAADDPR KLRPGEIDPN PEAKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR LASLQKRREL KAAGIDGRHR
201: KRKRKGIDYN AEIPFEKRAP AGFYDTADED RPADQVKFPT TIEELEGKRR ADVEAHLRKQ DVARNKIAQR QDAPAAILQA NKLNDPEVVR KRSKLMLPPP
301: QISDHELEEI AKMGYASDLL AENEELTEGS AATRALLANY SQTPRQGMTP MRTPQRTPAG KGDAIMMEAE NLARLRDSQT PLLGGENPEL HPSDFTGVTP
401: RKKEIQTPNP MLTPSMTPGG AGLTPRIGLT PSRDGSSFSM TPKGTPFRDE LHINEDMDMH ESAKLERQRR EEARRSLRSG LTGLPQPKNE YQIVAQPPPE
501: ESEEPEEKIE EDMSDRIARE KAEEEARQQA LLKKRSKVLQ RDLPRPPAAS LAVIRNSLLS ADGDKSSVVP PTPIEVADKM VREELLQLLE HDNAKYPLDD
601: KAEKKKGAKN RTNRSASQVL AIDDFDENEL QEADKMIKEE GKFLCVSMGH ENKTLDDFVE AHNTCVNDLM YFPTRSAYEL SSVAGNADKV AAFQEEMENV
701: RKKMEEDEKK AEHMKAKYKT YTKGHERRAE TVWTQIEATL KQAEIGGTEV ECFKALKRQE EMAASFRKKN LQEEVIKQKE TESKLQTRYG NMLAMVEKAE
801: EIMVGFRAQA LKKQEDVEDS HKLKEAKLAT GEEEDIAIAM EASA

Arabidopsis Description

CDC5Cell division cycle 5-like protein [Source:UniProtKB/Swiss-Prot;Acc:P92948]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.