CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86629
CDX89818
CDX90556
CDX92209
CDX95551
CDY09730
CDY15510
CDY18239
CDY18500
CDY24431
CDY24603

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09770.1	CDX86629	AT1G04510.1	19629177
AT1G09770.1	CDX89818	AT1G04510.1	19629177
AT1G09770.1	CDY15510	AT1G04510.1	19629177
AT1G09770.1	CDY18239	AT1G04510.1	19629177
AT1G09770.1	CDX92209	AT3G18165.1	17575050
AT1G09770.1	CDX95551	AT3G18165.1	17575050
AT1G09770.1	CDY18500	AT3G18165.1	17575050
AT1G09770.1	CDY24431	AT3G18165.1	17575050
AT1G09770.1	CDY24603	AT3G18165.1	17575050
AT1G09770.1	CDX90556	AT4G15900.1	17575050
AT1G09770.1	CDY09730	AT4G15900.1	17575050

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027160.1-P	Field mustard	nucleus	99.58	99.58
CDY47227	Canola	nucleus	95.34	95.34
CDY53404	Canola	nucleus	13.98	24.63
CDY31065	Canola	nucleus	83.05	23.14
AT1G09770.1	Thale cress	nucleus	82.63	23.1
CDX93482	Canola	nucleus	82.63	23.08
CDX94951	Canola	nucleus	82.63	23.08
CDY20673	Canola	nucleus	82.63	23.02
Zm00001d042287_P001	Maize	extracellular, nucleus, plasma membrane	80.08	20.43
Os04t0348300-01	Rice	nucleus	79.66	19.34
KRG92639	Soybean	nucleus	78.81	19.31
KRH34143	Soybean	nucleus	78.39	19.23
KXG34025	Sorghum	nucleus	80.08	19.23
EES15997	Sorghum	nucleus	80.08	19.17
PGSC0003DMT400029953	Potato	nucleus	77.97	18.66
Solyc04g009950.2.1	Tomato	nucleus	77.97	18.64
TraesCS5D01G460800.1	Wheat	nucleus	79.24	18.46
TraesCS5B01G459200.1	Wheat	nucleus	79.24	18.28
TraesCS5A01G450800.1	Wheat	nucleus	79.24	18.23
HORVU5Hr1G108630.3	Barley	nucleus	79.24	17.67
TraesCS5D01G314000.1	Wheat	nucleus	79.24	17.66
HORVU5Hr1G080010.3	Barley	nucleus	79.24	17.48
TraesCS5A01G307100.1	Wheat	nucleus	79.24	17.3
TraesCS5B01G307500.2	Wheat	nucleus	79.24	17.25
GSMUA_Achr9P23340_001	Banana	nucleus	78.81	16.5
VIT_14s0036g00510.t01	Wine grape	nucleus	59.75	14.27

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	MapMan:15.5.2.2	MapMan:16.4.5.1.2	GO:A0A078IVT9	UniProt:A0A078IVT9
EnsemblPlants:CDY53058	ProteinID:CDY53058	ProteinID:CDY53058.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00008475001	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF13921
PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF919	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI0004EF438D	SEG:seg	:	:	:	:

Description

BnaA09g14230DBnaA09g14230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IVT9]

Coordinates

chrLK033159:+:66028..66738

Molecular Weight (calculated)

26942.0 Da

IEP (calculated)

10.197

GRAVY (calculated)

-1.117

Length

236 amino acids

Sequence
(BLAST)

001: MRSMVKGGVW KNTEDEVLKA AMMKYGKNQW GRISSLSVRK SAKQCKARWN EWLDPSIKKT EWTREEDEKL LHLSKILPTQ WRTIAPAVGR TPSQCLERYE
101: KLLDASSCSK GYEAGGDPRK LRPGEIDPNP ESKPARPDQV DMEDDEMEML SEARARLANT RGKKAKRKAR EKQIQEARSL GSLQKRRELI AAGIDDGKRR
201: NRKGKGINYS AEIAFEKRAP AGFYDTADED RHADNH

Best Arabidopsis Sequence Match ( AT1G09770.1 )
(BLAST)

001: MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT EWTREEDEKL LHLAKLLPTQ WRTIAPIVGR TPSQCLERYE
101: KLLDAACTKD ENYDAADDPR KLRPGEIDPN PEAKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR LASLQKRREL KAAGIDGRHR
201: KRKRKGIDYN AEIPFEKRAP AGFYDTADED RPADQVKFPT TIEELEGKRR ADVEAHLRKQ DVARNKIAQR QDAPAAILQA NKLNDPEVVR KRSKLMLPPP
301: QISDHELEEI AKMGYASDLL AENEELTEGS AATRALLANY SQTPRQGMTP MRTPQRTPAG KGDAIMMEAE NLARLRDSQT PLLGGENPEL HPSDFTGVTP
401: RKKEIQTPNP MLTPSMTPGG AGLTPRIGLT PSRDGSSFSM TPKGTPFRDE LHINEDMDMH ESAKLERQRR EEARRSLRSG LTGLPQPKNE YQIVAQPPPE
501: ESEEPEEKIE EDMSDRIARE KAEEEARQQA LLKKRSKVLQ RDLPRPPAAS LAVIRNSLLS ADGDKSSVVP PTPIEVADKM VREELLQLLE HDNAKYPLDD
601: KAEKKKGAKN RTNRSASQVL AIDDFDENEL QEADKMIKEE GKFLCVSMGH ENKTLDDFVE AHNTCVNDLM YFPTRSAYEL SSVAGNADKV AAFQEEMENV
701: RKKMEEDEKK AEHMKAKYKT YTKGHERRAE TVWTQIEATL KQAEIGGTEV ECFKALKRQE EMAASFRKKN LQEEVIKQKE TESKLQTRYG NMLAMVEKAE
801: EIMVGFRAQA LKKQEDVEDS HKLKEAKLAT GEEEDIAIAM EASA

Arabidopsis Description

CDC5Cell division cycle 5-like protein [Source:UniProtKB/Swiss-Prot;Acc:P92948]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.