Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 3
- peroxisome 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021297.1-P | Field mustard | cytosol | 42.24 | 100.0 |
| CDX95551 | Canola | cytosol | 41.57 | 98.42 |
| CDX92209 | Canola | nucleus | 39.9 | 94.47 |
| CDY24431 | Canola | nucleus | 39.57 | 93.68 |
| AT3G18165.1 | Thale cress | cytosol | 38.4 | 90.91 |
| CDY24603 | Canola | cytosol | 12.19 | 82.95 |
| Solyc03g119010.2.1 | Tomato | nucleus | 26.54 | 66.25 |
| PGSC0003DMT400014424 | Potato | nucleus | 27.55 | 65.74 |
| KRH60495 | Soybean | endoplasmic reticulum, nucleus | 25.04 | 59.29 |
| KRH41788 | Soybean | nucleus | 24.21 | 57.54 |
| VIT_17s0000g02840.t01 | Wine grape | cytosol, mitochondrion, nucleus | 19.87 | 57.49 |
| GSMUA_Achr3P18370_001 | Banana | cytosol | 13.52 | 56.64 |
| EES00531 | Sorghum | cytosol | 22.7 | 53.54 |
| TraesCS3A01G181200.1 | Wheat | nucleus | 22.87 | 53.52 |
| TraesCS3B01G211300.1 | Wheat | cytosol | 22.54 | 52.73 |
| TraesCS3D01G186100.1 | Wheat | cytosol | 22.54 | 52.73 |
| HORVU3Hr1G037080.1 | Barley | plastid | 23.04 | 46.31 |
| Zm00001d040357_P001 | Maize | cytosol | 23.21 | 38.5 |
| GSMUA_Achr3P18380_001 | Banana | cytosol | 10.85 | 32.18 |
Protein Annotations
| MapMan:16.4.5.1.1 | MapMan:23.4.2.2 | GO:A0A078FVQ7 | UniProt:A0A078FVQ7 | EnsemblPlants:CDY18500 | ProteinID:CDY18500 |
| ProteinID:CDY18500.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005777 | GO:GO:0005779 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0007031 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | EnsemblPlantsGene:GSBRNA2T00005511001 | PFAM:PF04882 |
| PFAM:PF05700 | InterPro:Peroxin-3 | InterPro:SPF27 | UniParc:UPI0004EEBABB | SEG:seg | : |
Description
BnaA01g26950DBnaA01g26950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FVQ7]
Coordinates
chrLK032086:+:111224..115897
Molecular Weight (calculated)
68781.0 Da
IEP (calculated)
6.326
GRAVY (calculated)
-0.406
Length
599 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLFRDFWRK HRKKILVTTT CLGSGLLIYK LYNAHTRNLA DLERELANER HNDELIKAQM KAHFETIQMI ADTTTLPHAL HHLSSRIVEE INVSSVMEKL
101: SRGKGTLVPS EKLHLWSELK ILSFTRMVVT LWSVTMLSLY IRVQVNILGR HLYIDTARGL ASSHLLEELD LIDREDEQKF LTSADYLATN SMPSLISHVK
201: SAVKEVLKGK QLKDVLTTRT LEETVIRILG LFMSTGSPHH WIDYLMMPQD TTTDVSSSDA TVTKFHLLIT ETREVLTSNE FTDVVEIALK SCTVALVEEM
301: ETQPGLATGI QLAKLLPQIE KTVPEISAVP DKNRFLQLIR DLPQAVMATN NGDVLMLEAA PEASKPWASA ANAEVIDALP YIDDDYGNPL IKAEVDRLVE
401: EEMRRSSRKP ADFLKELPPL PKFDFENCPV LGKEYERVRA GKPPVRIDFE SRYKVELPPA SKKNDDAAWK QYLQKNQRSL QQKMIELENL EMMSKQGPEL
501: WRQNNHRLEV FLTRMQKLAQ EQNEEIEKVN RERKYHQQTT AYELNALSQE WRQLCVKNME IQSACVVLET KIDAFKKEAA ERGWNLEEKL ESVKPLQPQ
101: SRGKGTLVPS EKLHLWSELK ILSFTRMVVT LWSVTMLSLY IRVQVNILGR HLYIDTARGL ASSHLLEELD LIDREDEQKF LTSADYLATN SMPSLISHVK
201: SAVKEVLKGK QLKDVLTTRT LEETVIRILG LFMSTGSPHH WIDYLMMPQD TTTDVSSSDA TVTKFHLLIT ETREVLTSNE FTDVVEIALK SCTVALVEEM
301: ETQPGLATGI QLAKLLPQIE KTVPEISAVP DKNRFLQLIR DLPQAVMATN NGDVLMLEAA PEASKPWASA ANAEVIDALP YIDDDYGNPL IKAEVDRLVE
401: EEMRRSSRKP ADFLKELPPL PKFDFENCPV LGKEYERVRA GKPPVRIDFE SRYKVELPPA SKKNDDAAWK QYLQKNQRSL QQKMIELENL EMMSKQGPEL
501: WRQNNHRLEV FLTRMQKLAQ EQNEEIEKVN RERKYHQQTT AYELNALSQE WRQLCVKNME IQSACVVLET KIDAFKKEAA ERGWNLEEKL ESVKPLQPQ
001: MDLVRGLWRK HRRKILVTTT CLGSGYLLYK LYNAHTRKLA DLERELANER ENDEIIKTQM KAHFDNIQMI ADTTTLPHAI HHLSSRVVEE IDVSSIMDKL
101: SKGKGILIPS EKLQLWNELK ILSFTRMVLS LWSVTMLSLY IRVQVNILGR HLYIDTARGL GSSHLLDELD LIERDDEQKF LTSADFLATS GMPSLISNMQ
201: NAVKEVLKGK QLKDVLTTSA LRETVMRILD VFMSTGSPHH WVDYLMMSQD ATTDVSSSDA TVTKFHLLIT ETREVLTSND FSNVAEISLK CCAVALVEEM
301: ETQTGLATGM QLAKLLPQIE KTMPEISAEP EKNRFLQLIR DLPEVKLFFT LLYANMPQ
101: SKGKGILIPS EKLQLWNELK ILSFTRMVLS LWSVTMLSLY IRVQVNILGR HLYIDTARGL GSSHLLDELD LIERDDEQKF LTSADFLATS GMPSLISNMQ
201: NAVKEVLKGK QLKDVLTTSA LRETVMRILD VFMSTGSPHH WVDYLMMSQD ATTDVSSSDA TVTKFHLLIT ETREVLTSND FSNVAEISLK CCAVALVEEM
301: ETQTGLATGM QLAKLLPQIE KTMPEISAEP EKNRFLQLIR DLPEVKLFFT LLYANMPQ
Arabidopsis Description
PEX3-1Peroxin 3-1 [Source:UniProtKB/TrEMBL;Acc:F4J7K3]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.