CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05604	Canola	cytosol	95.6	96.04
Bra020619.1-P	Field mustard	cytosol	99.88	94.41
AT5G28740.1	Thale cress	cytosol	91.77	86.37
CDY48662	Canola	cytosol, nucleus, plastid	8.34	77.42
CDY48663	Canola	mitochondrion	10.78	73.81
Solyc03g044040.1.1	Tomato	cytosol	16.22	73.68
GSMUA_Achr9P04370_001	Banana	cytosol	62.46	67.8
CDX86208	Canola	cytosol	15.53	63.81
Os07t0644300-02	Rice	nucleus	66.86	61.98
Zm00001d007043_P003	Maize	plastid	66.05	61.49
EER99801	Sorghum	cytosol, plastid	66.05	61.16
TraesCS2B01G167600.1	Wheat	cytosol	65.59	60.73
HORVU2Hr1G025180.1	Barley	cytosol	65.47	60.69
Zm00001d022335_P002	Maize	plasma membrane	65.59	60.6
TraesCS2D01G145800.1	Wheat	cytosol	65.47	60.56
TraesCS2A01G142400.1	Wheat	cytosol, nucleus	65.47	60.56
CDY54766	Canola	nucleus	5.21	48.39
CDX73271	Canola	cytosol	12.63	41.13
EER89493	Sorghum	cytosol	33.49	36.91
Os06t0235800-00	Rice	nucleus	34.18	36.83
TraesCS7A01G192600.1	Wheat	cytosol	32.21	36.39
TraesCS4B01G183500.1	Wheat	cytosol	32.45	36.27
HORVU7Hr1G039410.1	Barley	cytosol	32.91	35.68
TraesCS7D01G193900.1	Wheat	cytosol	31.98	35.61
CDY68456	Canola	cytosol	5.56	34.53
HORVU5Hr1G069290.1	Barley	cytosol	30.94	34.14
TraesCS7B01G098000.1	Wheat	cytosol	31.29	33.71
Solyc03g044030.1.1	Tomato	nucleus	13.44	32.13
Os01t0686600-01	Rice	nucleus	13.67	29.8
CDY14354	Canola	nucleus	4.52	26.71
CDY33383	Canola	cytosol	4.75	14.75

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.4.5.2.5	GO:A0A078H7P8	UniProt:A0A078H7P8	EnsemblPlants:CDY33886	ProteinID:CDY33886
ProteinID:CDY33886.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00055388001	InterPro:HAT
InterPro:IPR011990	InterPro:IPR013026	PFscan:PS50293	PANTHER:PTHR11246	PANTHER:PTHR11246:SF5	SMART:SM00386
SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EE1A2F	SEG:seg	:

Description

BnaA02g31010DBnaA02g31010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H7P8]

Coordinates

chrLK032324:+:22275..25773

Molecular Weight (calculated)

100494.0 Da

IEP (calculated)

6.166

GRAVY (calculated)

-0.482

Length

863 amino acids

Sequence
(BLAST)

001: MAISQDLYPS QEDLVYEEEI LRNPFSLKLW WRYLISKSDS PFKKRFVIYE RALKALPGSY KLWHAYLRER LEIVRNLPVT HPHYDSLNNT FERGLVTMHK
101: MPRIWVMYLQ TLTSQRLVTR TRRTFDRALC ALPVTQHERI WEPYLVFVGQ EGVPIETSLR VYRRYLMYDP SHIEEFIEFL LKSARWQEAA ERLAFVLNDD
201: QFYSIKGKTK HKLWMELCEL LVRHANEISG LNVDAIIRGG IRKFTDEVGM LWTSLADYYI RKNLLEKARD VYEEGMMKVV TVRDFSVIFD VYSRFEESTV
301: AKKMEMMSSS DEEEDEDILN GFWLNDDNDV DLRLARLEEL MNRRPALANS ILTYTEAVRT VDPMKALGKP HTLWVAFAKL YEDHKDLVNT RVILDKAVQV
401: NYKTVDHLAS VWCEWAEMEL RHKNFKGALE LMRRATAVPT VEVKRRVAAD GNEPVQMKLH RSLRLWSFYV DLEESLGTLE STRAVYEKIL DLRIATPQII
501: LNYAYLLEEN KYFEDAFKVY ERGVKIFKYP HVKDIWVTYL TKFVKRYGKA KLERARELFE HAVSMAPSDS VRTLYLQYAK LEEDYGLAKR AMKVYEEATK
601: KVPEGQRLEM YEIYISRAAE IFGVPRTREI YEQAIESGLP HKDVKIMCIK FAELERSLGE IDRSRAVYKY ASQYADPRSD PEFWNKWHEF EVLHGNEDTY
701: REMLRIKRSV SASYSQTHFI LPENMMQKDK IDVEEAKDEL KKAGLPDDEM AALERQLMAA PMSTTVTSKD GGRRVGFVSA GVISQSGENA GKPVTGNGED
801: IELPDEDESD GDDNVEIAQK EVPAAVFGGL ARKREEDGKE AEEDGAGKTL GALERIKRQK LAQ

Best Arabidopsis Sequence Match ( AT5G28740.1 )
(BLAST)

001: MAISKDLYPS QEDLLYEEEL LRNQFSLKLW WRYLIAKAES PFKKRFIIYE RALKALPGSY KLWYAYLRER LDIVRNLPVT HPQYDSLNNT FERGLVTMHK
101: MPRIWVMYLQ TLTVQQLITR TRRTFDRALC ALPVTQHDRI WEPYLVFVSQ NGIPIETSLR VYRRYLMYDP SHIEEFIEFL VKSERWQESA ERLASVLNDD
201: KFYSIKGKTK HKLWLELCEL LVHHANVISG LNVDAIIRGG IRKFTDEVGM LWTSLADYYI RKNLLEKARD IYEEGMMKVV TVRDFSVIFD VYSRFEESTV
301: AKKMEMMSSS DEEDENEENG VEDDEEDVRL NFNLSVKELQ RKILNGFWLN DDNDVDLRLA RLEELMNRRP ALANSVLLRQ NPHNVEQWHR RVKIFEGNAA
401: KQILTYTEAV RTVDPMKAVG KPHTLWVAFA KLYENHKDLV NTRVIFDKAV QVNYKTVDHL ASVWCEWAEM ELRHKNFKGA LELMRRATAV PTVEVRRRVA
501: ADGNEPVQMK LHRSLRLWSF YVDLEESLGT LESTRAVYEK ILDLRIATPQ IIMNYAFLLE ENKYFEDAFK VYERGVKIFK YPHVKDIWVT YLTKFVKRYG
601: KTKLERAREL FEHAVSMAPS DAVRTLYLQY AKLEEDYGLA KRAMKVYEEA TKKVPEGQKL EMYEIYISRA AEIFGVPRTR EIYEQAIESG LPHKDVKIMC
701: IKFAELERSL GEIDRARALY KYSSQFADPR SDPEFWNKWH EFEVQHGNED TYREMLRIKR SVSASYSQTH FILPENMMQK DKLLDVEDAK GELKRAGLPE
801: DEMAALERQL LSTTTPTEPA KDGGRRVGFV SAGVISQSGE NEGKPVTGNG EDIELPDESD DESDGDDHVE ISQKEVPAAV FGGLARKRDE DGEEAGEDGA
901: AQKLGALERI KRQKLNQ

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LKU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.