Factsheet for GSMUA_Achr9P04370_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g044040.1.1	Tomato	cytosol	17.86	74.74
CDY48662	Canola	cytosol, nucleus, plastid	7.67	65.59
KRH21565	Soybean	nucleus	75.35	65.18
KRH10763	Soybean	cytosol	75.22	65.14
PGSC0003DMT400017726	Potato	cytosol	72.96	63.39
Solyc01g086990.2.1	Tomato	cytosol, nucleus	72.7	63.1
CDY05604	Canola	cytosol	67.92	62.86
CDY33886	Canola	cytosol	67.8	62.46
AT5G28740.1	Thale cress	cytosol	71.45	61.94
Bra020619.1-P	Field mustard	cytosol	70.94	61.77
EER99801	Sorghum	cytosol, plastid	72.33	61.7
Zm00001d007043_P003	Maize	plastid	71.45	61.27
Os07t0644300-02	Rice	nucleus	71.45	61.01
Zm00001d022335_P002	Maize	plasma membrane	71.57	60.92
TraesCS2D01G145800.1	Wheat	cytosol	71.45	60.88
TraesCS2B01G167600.1	Wheat	cytosol	71.32	60.84
HORVU2Hr1G025180.1	Barley	cytosol	71.07	60.69
TraesCS2A01G142400.1	Wheat	cytosol, nucleus	71.19	60.66
VIT_00s0404g00060.t01	Wine grape	cytosol	64.78	54.32
CDY48663	Canola	mitochondrion	8.43	53.17
CDX86208	Canola	cytosol	13.71	51.9
Bra010008.1-P	Field mustard	cytosol, nucleus, plastid	15.97	49.03
CDY54766	Canola	nucleus	4.91	41.94
Bra027126.1-P	Field mustard	endoplasmic reticulum, golgi	8.05	41.56
Bra032990.1-P	Field mustard	cytosol, nucleus, plastid	16.48	41.32
EER89493	Sorghum	cytosol	34.59	35.12
CDX73271	Canola	cytosol	11.7	35.09
Os06t0235800-00	Rice	nucleus	35.22	34.96
CDY68456	Canola	cytosol	6.04	34.53
TraesCS7A01G192600.1	Wheat	cytosol	32.08	33.38
TraesCS4B01G183500.1	Wheat	cytosol	32.2	33.16
HORVU5Hr1G069290.1	Barley	cytosol	32.45	32.99
TraesCS7D01G193900.1	Wheat	cytosol	31.95	32.77
HORVU7Hr1G039410.1	Barley	cytosol	32.58	32.54
TraesCS7B01G098000.1	Wheat	cytosol	30.44	30.21
Os01t0686600-01	Rice	nucleus	13.46	27.02
Solyc03g044030.1.1	Tomato	nucleus	10.31	22.71
Bra003036.1-P	Field mustard	nucleus	4.53	21.56
CDY14354	Canola	nucleus	3.27	17.81

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.4.5.2.5	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr9G04370_001	EnsemblPlants:GSMUA_Achr9P04370_001
EnsemblPlants:GSMUA_Achr9T04370_001	InterPro:HAT	InterPro:IPR011990	InterPro:IPR013026	UniProt:M0TXE6	PFscan:PS50293
PANTHER:PTHR11246	PANTHER:PTHR11246:SF5	SMART:SM00386	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
UniParc:UPI000295F9C8	SEG:seg	:	:	:	:

Description

Putative Pre-mRNA-splicing factor SYF1 [Source:GMGC_GENE;Acc:GSMUA_Achr9G04370_001]

Coordinates

chr9:-:2903171..2908081

Molecular Weight (calculated)

91549.6 Da

IEP (calculated)

5.662

GRAVY (calculated)

-0.516

Length

795 amino acids

Sequence
(BLAST)

001: MAVTPATGAA EISPDLYPSE EDLPYEEEIL RNPFSLKLWW RYLIARSSAP FRRRARLLTR GRRTFDRTLR ALPVTQHDRI WEPYLALVSL PGVPVETSLR
101: VFRRYLLFDP SHIEDFINFL IASRRWQEAA ERLAGVLNDD SFHSIKGKTR HQLWLELCDI LTRHATEVSG LKVDAIIRGG IRRDIFEEGI QTVTTVRDFS
201: VIFESYAQFE QSALAAKIET AEEEQEEDGE GEEDGRRDGL MARFENLLSR RPELLNSVLL RQNPHNVEQW HRRVKIFEND PAKQVFTYIE AVRTVDPMKA
301: VGKPHTLWIA FARLYESHND LQNSRDIFEK AVNVNYKTVD HLATVWCEYA EMELRHKNFG RALELMRKAT AEPSVEVKRR VAADGNEPVQ MRLHKSLRLW
401: SFYVDLEESL GSLESTRAVY ERILDLRIAT PQIILNYAFL LEENKYFEDA FKVYERGVKI FKYPHVKDIW VTYLSKFVKR YGKTKLERAR ELFEHAVEQA
501: PANEVKPIYL QYAKLEEEYG LAKRAMKVYD QAVKAVPDNE KLSMYEIYIA RAAAIFGVPK TREIYEQAIE SGLPDNDAKK MCLKYAELER NLGEIDRARA
601: IYVFASQFAD PRSDPDFWKV WKDFEIQHGN EDTFREMLRI GRSVSASYSQ THFILPEYLM QKDQKLNLEE AVDTLKRAGV PEDEMATLER QLAPAAANSP
701: VKNGGRMVNF VSAGSESQSD GGIRLTANNE DIELPEESDS EDDKIEIAQK NVPASVFGDL AEKVAKDEDK GADAADNGGS SLLGALERIK RQRRQ

Best Arabidopsis Sequence Match ( AT5G28740.1 )
(BLAST)

001: MAISKDLYPS QEDLLYEEEL LRNQFSLKLW WRYLIAKAES PFKKRFIIYE RALKALPGSY KLWYAYLRER LDIVRNLPVT HPQYDSLNNT FERGLVTMHK
101: MPRIWVMYLQ TLTVQQLITR TRRTFDRALC ALPVTQHDRI WEPYLVFVSQ NGIPIETSLR VYRRYLMYDP SHIEEFIEFL VKSERWQESA ERLASVLNDD
201: KFYSIKGKTK HKLWLELCEL LVHHANVISG LNVDAIIRGG IRKFTDEVGM LWTSLADYYI RKNLLEKARD IYEEGMMKVV TVRDFSVIFD VYSRFEESTV
301: AKKMEMMSSS DEEDENEENG VEDDEEDVRL NFNLSVKELQ RKILNGFWLN DDNDVDLRLA RLEELMNRRP ALANSVLLRQ NPHNVEQWHR RVKIFEGNAA
401: KQILTYTEAV RTVDPMKAVG KPHTLWVAFA KLYENHKDLV NTRVIFDKAV QVNYKTVDHL ASVWCEWAEM ELRHKNFKGA LELMRRATAV PTVEVRRRVA
501: ADGNEPVQMK LHRSLRLWSF YVDLEESLGT LESTRAVYEK ILDLRIATPQ IIMNYAFLLE ENKYFEDAFK VYERGVKIFK YPHVKDIWVT YLTKFVKRYG
601: KTKLERAREL FEHAVSMAPS DAVRTLYLQY AKLEEDYGLA KRAMKVYEEA TKKVPEGQKL EMYEIYISRA AEIFGVPRTR EIYEQAIESG LPHKDVKIMC
701: IKFAELERSL GEIDRARALY KYSSQFADPR SDPEFWNKWH EFEVQHGNED TYREMLRIKR SVSASYSQTH FILPENMMQK DKLLDVEDAK GELKRAGLPE
801: DEMAALERQL LSTTTPTEPA KDGGRRVGFV SAGVISQSGE NEGKPVTGNG EDIELPDESD DESDGDDHVE ISQKEVPAAV FGGLARKRDE DGEEAGEDGA
901: AQKLGALERI KRQKLNQ

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LKU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.