CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 3
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022335_P002	Maize	plasma membrane	97.0	96.79
Zm00001d007043_P003	Maize	plastid	96.14	96.66
Os07t0644300-02	Rice	nucleus	91.09	91.19
TraesCS2B01G167600.1	Wheat	cytosol	87.34	87.34
TraesCS2A01G142400.1	Wheat	cytosol, nucleus	87.34	87.25
HORVU2Hr1G025180.1	Barley	cytosol	87.02	87.11
TraesCS2D01G145800.1	Wheat	cytosol	87.02	86.92
GSMUA_Achr9P04370_001	Banana	cytosol	61.7	72.33
KRH10763	Soybean	cytosol	66.74	67.76
PGSC0003DMT400017726	Potato	cytosol	66.2	67.43
KRH21565	Soybean	nucleus	66.31	67.25
Solyc01g086990.2.1	Tomato	cytosol, nucleus	65.88	67.03
CDY33886	Canola	cytosol	61.16	66.05
Solyc03g044040.1.1	Tomato	cytosol	13.41	65.79
CDY05604	Canola	cytosol	60.41	65.54
Bra020619.1-P	Field mustard	cytosol	63.84	65.17
AT5G28740.1	Thale cress	cytosol	63.95	64.99
CDY48662	Canola	cytosol, nucleus, plastid	5.9	59.14
VIT_00s0404g00060.t01	Wine grape	cytosol	58.05	57.07
CDY48663	Canola	mitochondrion	7.19	53.17
CDX86208	Canola	cytosol	11.37	50.48
Bra010008.1-P	Field mustard	cytosol, nucleus, plastid	13.52	48.65
EER89493	Sorghum	cytosol	36.8	43.81
CDY54766	Canola	nucleus	4.18	41.94
Bra027126.1-P	Field mustard	endoplasmic reticulum, golgi	6.76	40.91
Bra032990.1-P	Field mustard	cytosol, nucleus, plastid	13.52	39.75
CDY68456	Canola	cytosol	4.94	33.09
CDX73271	Canola	cytosol	9.33	32.83
Solyc03g044030.1.1	Tomato	nucleus	11.8	30.47
Bra003036.1-P	Field mustard	nucleus	3.97	22.16
CDY14354	Canola	nucleus	2.9	18.49

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.4.5.2.5	EntrezGene:8073102	UniProt:C5X3Z7	ncoils:Coil	EnsemblPlants:EER99801
ProteinID:EER99801	ProteinID:EER99801.1	GO:GO:0000349	GO:GO:0000974	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0071010
GO:GO:0071012	GO:GO:0071013	GO:GO:0071014	InterPro:HAT	InterPro:IPR002885	InterPro:IPR011990
InterPro:IPR013026	PFAM:PF01535	PFscan:PS50293	PANTHER:PTHR11246	PANTHER:PTHR11246:SF5	InterPro:Pentatricopeptide_repeat
SMART:SM00386	EnsemblPlantsGene:SORBI_3002G396000	SUPFAM:SSF48452	unigene:Sbi.5660	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0001A83D94	RefSeq:XP_002463280.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:74791437..74796482

Molecular Weight (calculated)

106994.0 Da

IEP (calculated)

6.359

GRAVY (calculated)

-0.536

Length

932 amino acids

Sequence
(BLAST)

001: MPSASGPVAV ASASAAAKAA PSPAIGISPD LYPTEDDLPY EEEILREPFK LKGWWRYLVA RASAPFAKRA VIYERALKAL PGSYKLWHAY LRDRLDHARP
101: HPIDHPAYSS LNNTFERALA TMHKMPRVWV LYLTSLLDQR LLTRARRSFD RALRALPVTQ HDRIWPLYLR LASLPACPVE TSLRVFRRYL QFDPSHAEDF
201: INFLISANHW QEAANRLASV LNDDGFRSVK GKTRHQLWLE LCEILTKHAD EVAGLKVDAI LRGGIRKFTD EVGKLWTSLA DYYVRRGLFE KARDVFEEGI
301: SSVVTVKEFS VVFEAYTQFE QSMLAAKLEA AEEEGAEDEN EGGGRKSGMD KLSKKFLDEF WLNDEDDTDL RMARFERLLD RRPELLSSVL LRQNPHNVEE
401: WHRRVKLFEK DPARQVATYV EAVKTVDPMK AVGKPHTLWV AFAKMYEKHN RLDSAEDIFK RATQVNYKAV DHLASIWCEW AEMELRHNNF DKAIELMRQA
501: TAEPSVEVKR RAAAEGDEPV QMKVHKSLKM WSFYVDLEES LGTLDSTRAV YERILDLRIA TPQIILNYAY LLEEHKYFED AFKVYERGVK IFKYPHVKAI
601: WVTYLTKFVQ RYKRSKLERA RELFHEAVQQ APPEEKKPLY LQWAKLEEDY GLAKRAMNVY DEAVRAVPNS EKMAMYEIYI ARAAELFGVP RTRQIYEQAI
701: ESGLPDRDVL TMCMKFAELE RNLGEIDRSR AIYVHASNYA DPNNPDFWKK WNDFEIQHGN EDTFREMLRI KRTVAASRSQ THFILPEYLM QRDQRLNLDE
801: AVDTLKRAGV PEDEMAALER QLAPGPSTAP PAAPSTAPAS ANRMMNFVSA GVEAQAESSR QQAGNNEDIE LPDESDDEEP DVQIAEKSVP AAVFGELGKR
901: AAENAAENNE ESSGAQGNEQ LGALERIKRR RQ

Best Arabidopsis Sequence Match ( AT5G28740.1 )
(BLAST)

001: MAISKDLYPS QEDLLYEEEL LRNQFSLKLW WRYLIAKAES PFKKRFIIYE RALKALPGSY KLWYAYLRER LDIVRNLPVT HPQYDSLNNT FERGLVTMHK
101: MPRIWVMYLQ TLTVQQLITR TRRTFDRALC ALPVTQHDRI WEPYLVFVSQ NGIPIETSLR VYRRYLMYDP SHIEEFIEFL VKSERWQESA ERLASVLNDD
201: KFYSIKGKTK HKLWLELCEL LVHHANVISG LNVDAIIRGG IRKFTDEVGM LWTSLADYYI RKNLLEKARD IYEEGMMKVV TVRDFSVIFD VYSRFEESTV
301: AKKMEMMSSS DEEDENEENG VEDDEEDVRL NFNLSVKELQ RKILNGFWLN DDNDVDLRLA RLEELMNRRP ALANSVLLRQ NPHNVEQWHR RVKIFEGNAA
401: KQILTYTEAV RTVDPMKAVG KPHTLWVAFA KLYENHKDLV NTRVIFDKAV QVNYKTVDHL ASVWCEWAEM ELRHKNFKGA LELMRRATAV PTVEVRRRVA
501: ADGNEPVQMK LHRSLRLWSF YVDLEESLGT LESTRAVYEK ILDLRIATPQ IIMNYAFLLE ENKYFEDAFK VYERGVKIFK YPHVKDIWVT YLTKFVKRYG
601: KTKLERAREL FEHAVSMAPS DAVRTLYLQY AKLEEDYGLA KRAMKVYEEA TKKVPEGQKL EMYEIYISRA AEIFGVPRTR EIYEQAIESG LPHKDVKIMC
701: IKFAELERSL GEIDRARALY KYSSQFADPR SDPEFWNKWH EFEVQHGNED TYREMLRIKR SVSASYSQTH FILPENMMQK DKLLDVEDAK GELKRAGLPE
801: DEMAALERQL LSTTTPTEPA KDGGRRVGFV SAGVISQSGE NEGKPVTGNG EDIELPDESD DESDGDDHVE ISQKEVPAAV FGGLARKRDE DGEEAGEDGA
901: AQKLGALERI KRQKLNQ

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LKU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.