Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY33886 | Canola | cytosol | 86.37 | 91.77 |
| Bra020619.1-P | Field mustard | cytosol | 91.28 | 91.68 |
| CDY05604 | Canola | cytosol | 85.61 | 91.39 |
| KRH21565 | Soybean | nucleus | 78.84 | 78.67 |
| KRH10763 | Soybean | cytosol | 77.97 | 77.89 |
| PGSC0003DMT400017726 | Potato | cytosol | 76.88 | 77.05 |
| Solyc03g044040.1.1 | Tomato | cytosol | 15.38 | 74.21 |
| GSMUA_Achr9P04370_001 | Banana | cytosol | 61.94 | 71.45 |
| VIT_00s0404g00060.t01 | Wine grape | cytosol | 68.7 | 66.46 |
| Zm00001d007043_P003 | Maize | plastid | 65.21 | 64.51 |
| Os07t0644300-02 | Rice | nucleus | 65.32 | 64.34 |
| EER99801 | Sorghum | cytosol, plastid | 64.99 | 63.95 |
| TraesCS2B01G167600.1 | Wheat | cytosol | 64.78 | 63.73 |
| TraesCS2A01G142400.1 | Wheat | cytosol, nucleus | 64.78 | 63.67 |
| TraesCS2D01G145800.1 | Wheat | cytosol | 64.67 | 63.56 |
| Zm00001d022335_P002 | Maize | plasma membrane | 64.67 | 63.49 |
| HORVU2Hr1G025180.1 | Barley | cytosol | 64.34 | 63.37 |
| EER89493 | Sorghum | cytosol | 33.37 | 39.08 |
| Os06t0235800-00 | Rice | nucleus | 33.59 | 38.45 |
| TraesCS7A01G192600.1 | Wheat | cytosol | 31.73 | 38.09 |
| TraesCS4B01G183500.1 | Wheat | cytosol | 31.95 | 37.95 |
| HORVU7Hr1G039410.1 | Barley | cytosol | 32.82 | 37.81 |
| TraesCS7D01G193900.1 | Wheat | cytosol | 31.52 | 37.29 |
| HORVU5Hr1G069290.1 | Barley | cytosol | 31.41 | 36.83 |
| TraesCS7B01G098000.1 | Wheat | cytosol | 30.97 | 35.46 |
| Solyc03g044030.1.1 | Tomato | nucleus | 13.52 | 34.35 |
| Os01t0686600-01 | Rice | nucleus | 12.65 | 29.29 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:16.4.5.2.5 | EntrezGene:832986 | UniProt:A0A178ULT4 | ProteinID:AAF67364.1 | ProteinID:AED93830.1 |
| ArrayExpress:AT5G28740 | EnsemblPlantsGene:AT5G28740 | RefSeq:AT5G28740 | TAIR:AT5G28740 | RefSeq:AT5G28740-TAIR-G | EnsemblPlants:AT5G28740.1 |
| TAIR:AT5G28740.1 | Unigene:At.47571 | ncoils:Coil | GO:GO:0000349 | GO:GO:0000974 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0071010 | GO:GO:0071012 | GO:GO:0071013 | GO:GO:0071014 | InterPro:HAT | InterPro:IPR011990 |
| InterPro:IPR013026 | RefSeq:NP_198226.1 | ProteinID:OAO93621.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50293 | PANTHER:PTHR11246 |
| PANTHER:PTHR11246:SF5 | UniProt:Q9LKU3 | SMART:SM00386 | SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf |
| UniParc:UPI00000A012E | SEG:seg | : | : | : | : |
Description
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LKU3]
Coordinates
chr5:+:10780503..10783996
Molecular Weight (calculated)
107057.0 Da
IEP (calculated)
6.199
GRAVY (calculated)
-0.533
Length
917 amino acids
Sequence
(BLAST)
(BLAST)
001: MAISKDLYPS QEDLLYEEEL LRNQFSLKLW WRYLIAKAES PFKKRFIIYE RALKALPGSY KLWYAYLRER LDIVRNLPVT HPQYDSLNNT FERGLVTMHK
101: MPRIWVMYLQ TLTVQQLITR TRRTFDRALC ALPVTQHDRI WEPYLVFVSQ NGIPIETSLR VYRRYLMYDP SHIEEFIEFL VKSERWQESA ERLASVLNDD
201: KFYSIKGKTK HKLWLELCEL LVHHANVISG LNVDAIIRGG IRKFTDEVGM LWTSLADYYI RKNLLEKARD IYEEGMMKVV TVRDFSVIFD VYSRFEESTV
301: AKKMEMMSSS DEEDENEENG VEDDEEDVRL NFNLSVKELQ RKILNGFWLN DDNDVDLRLA RLEELMNRRP ALANSVLLRQ NPHNVEQWHR RVKIFEGNAA
401: KQILTYTEAV RTVDPMKAVG KPHTLWVAFA KLYENHKDLV NTRVIFDKAV QVNYKTVDHL ASVWCEWAEM ELRHKNFKGA LELMRRATAV PTVEVRRRVA
501: ADGNEPVQMK LHRSLRLWSF YVDLEESLGT LESTRAVYEK ILDLRIATPQ IIMNYAFLLE ENKYFEDAFK VYERGVKIFK YPHVKDIWVT YLTKFVKRYG
601: KTKLERAREL FEHAVSMAPS DAVRTLYLQY AKLEEDYGLA KRAMKVYEEA TKKVPEGQKL EMYEIYISRA AEIFGVPRTR EIYEQAIESG LPHKDVKIMC
701: IKFAELERSL GEIDRARALY KYSSQFADPR SDPEFWNKWH EFEVQHGNED TYREMLRIKR SVSASYSQTH FILPENMMQK DKLLDVEDAK GELKRAGLPE
801: DEMAALERQL LSTTTPTEPA KDGGRRVGFV SAGVISQSGE NEGKPVTGNG EDIELPDESD DESDGDDHVE ISQKEVPAAV FGGLARKRDE DGEEAGEDGA
901: AQKLGALERI KRQKLNQ
101: MPRIWVMYLQ TLTVQQLITR TRRTFDRALC ALPVTQHDRI WEPYLVFVSQ NGIPIETSLR VYRRYLMYDP SHIEEFIEFL VKSERWQESA ERLASVLNDD
201: KFYSIKGKTK HKLWLELCEL LVHHANVISG LNVDAIIRGG IRKFTDEVGM LWTSLADYYI RKNLLEKARD IYEEGMMKVV TVRDFSVIFD VYSRFEESTV
301: AKKMEMMSSS DEEDENEENG VEDDEEDVRL NFNLSVKELQ RKILNGFWLN DDNDVDLRLA RLEELMNRRP ALANSVLLRQ NPHNVEQWHR RVKIFEGNAA
401: KQILTYTEAV RTVDPMKAVG KPHTLWVAFA KLYENHKDLV NTRVIFDKAV QVNYKTVDHL ASVWCEWAEM ELRHKNFKGA LELMRRATAV PTVEVRRRVA
501: ADGNEPVQMK LHRSLRLWSF YVDLEESLGT LESTRAVYEK ILDLRIATPQ IIMNYAFLLE ENKYFEDAFK VYERGVKIFK YPHVKDIWVT YLTKFVKRYG
601: KTKLERAREL FEHAVSMAPS DAVRTLYLQY AKLEEDYGLA KRAMKVYEEA TKKVPEGQKL EMYEIYISRA AEIFGVPRTR EIYEQAIESG LPHKDVKIMC
701: IKFAELERSL GEIDRARALY KYSSQFADPR SDPEFWNKWH EFEVQHGNED TYREMLRIKR SVSASYSQTH FILPENMMQK DKLLDVEDAK GELKRAGLPE
801: DEMAALERQL LSTTTPTEPA KDGGRRVGFV SAGVISQSGE NEGKPVTGNG EDIELPDESD DESDGDDHVE ISQKEVPAAV FGGLARKRDE DGEEAGEDGA
901: AQKLGALERI KRQKLNQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.