Factsheet for Os06t0235800-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus, plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G193900.1	Wheat	cytosol	67.17	69.42
TraesCS7A01G192600.1	Wheat	cytosol	66.04	69.24
TraesCS4B01G183500.1	Wheat	cytosol	66.04	68.52
EER89493	Sorghum	cytosol	66.79	68.33
HORVU7Hr1G039410.1	Barley	cytosol	67.04	67.46
HORVU5Hr1G069290.1	Barley	cytosol	64.79	66.37
TraesCS7B01G098000.1	Wheat	cytosol	64.54	64.54
CDY48662	Canola	cytosol, nucleus, plastid	5.12	44.09
Os07t0644300-02	Rice	nucleus	45.44	39.1
Os01t0686600-01	Rice	nucleus	18.85	38.13
Solyc03g044040.1.1	Tomato	cytosol	8.86	37.37
GSMUA_Achr9P04370_001	Banana	cytosol	34.96	35.22
KRH10763	Soybean	cytosol	39.83	34.75
KRH21565	Soybean	nucleus	39.45	34.39
CDY33886	Canola	cytosol	36.83	34.18
Bra020619.1-P	Field mustard	cytosol	38.7	33.95
PGSC0003DMT400017726	Potato	cytosol	38.7	33.88
Solyc01g086990.2.1	Tomato	cytosol, nucleus	38.58	33.73
AT5G28740.1	Thale cress	cytosol	38.45	33.59
CDY05604	Canola	cytosol	35.21	32.83
CDY68456	Canola	cytosol	4.99	28.78
VIT_00s0404g00060.t01	Wine grape	cytosol	33.71	28.48
Solyc03g044030.1.1	Tomato	nucleus	12.48	27.7
CDX73271	Canola	cytosol	8.86	26.79
CDY14354	Canola	nucleus	3.62	19.86
Bra003036.1-P	Field mustard	nucleus	4.0	19.16
CDX86208	Canola	cytosol	4.99	19.05
Bra010008.1-P	Field mustard	cytosol, nucleus, plastid	5.37	16.6
Bra032990.1-P	Field mustard	cytosol, nucleus, plastid	5.37	13.56
Bra027126.1-P	Field mustard	endoplasmic reticulum, golgi	2.25	11.69
CDY54766	Canola	nucleus	1.12	9.68
CDY48663	Canola	mitochondrion	1.25	7.94

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.4.5.2.5	ProteinID:BAD37931.1	ProteinID:BAS96954.1	ProteinID:EAZ36403.1	GO:GO:0000349
GO:GO:0000974	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006396	GO:GO:0006397	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0071010	GO:GO:0071012	GO:GO:0071013
GO:GO:0071014	InterPro:HAT	InterPro:IPR011990	EnsemblPlantsGene:Os06g0235800	EnsemblPlants:Os06t0235800-00	PFAM:PF05843
PANTHER:PTHR11246	PANTHER:PTHR11246:SF15	UniProt:Q67V88	SMART:SM00386	SUPFAM:SSF48452	InterPro:Suf
InterPro:TPR-like_helical_dom_sf	UniParc:UPI00004263F0	SEG:seg	:	:	:

Description

Similar to predicted protein. (Os06t0235800-00)

Coordinates

chr6:-:7067117..7069533

Molecular Weight (calculated)

90354.4 Da

IEP (calculated)

7.945

GRAVY (calculated)

-0.244

Length

801 amino acids

Sequence
(BLAST)

001: MVAAMMISPE DVPYEEDVLR EPFRLRCWTR YLSAIRSAPL AKRSVIYERA LRALPGSYKL WHAYLTELAD AARAMPVAHR AHAALNSAFE RSLAAGMSRM
101: PRVWHMYFSA LLDQRLLTRA RRALDRALRS LPVTQHHRMW PLLLRLASLP GCPVPTAIRV LRRHLQFDPA HAEHFIAFLV SAGRWREAAD HLAAAVNDDC
201: FVSAKGRTKR QLLLDLCHLL AQHPEEVAGL PVDAILRGSV RRFPDEAGAL WTCLAGHYAR VGLHGKARDV FEEGVATATT VKDFRLVFEA YLHFENAMID
301: VELGEHGDAE ENTLGQGCWL ADRDDGDMAL ARLERLLERR PELLNRVQLR QNPHDVQAWH ARAKLFDEDP ARKVATYVEA VKTVDPAKAT GKPPPHTLWL
401: AFAKMYEDRG LLDSAREVLR RATQASFKAA DHLAAVWCEW AEMELRQHNA NRAIELIRQA TSEPSLEVRR QVAAGVGETV VQTKLHRSLK LWCFYADLME
501: THGSPESTCA VYDRMHELGI ITPLLVLRHA SLLQEHKRFE DAFRVYERGV RTFKYPHDEA IWAAYLTKFV ERHGASKPQR VRDLFDDAVR HAPAEKKAAV
601: YMQYARFEED FGLAKRVLKV YEEAAAAVPG GDKLAVYEAY VARATALFGV LKAREIYHQA ILHGGGLPDA DARVLCLQFA DLEIGLGEAH RARALYVYAS
701: GFTDPTAHPD FWRRWNDFEV RHGDECTFRE MLRVKRTVAA ANAGAGAVAQ LAEQVLADDA MEQMDAAVAA PKRPLLACAA QQADHASGFD EECKRRRLVY
801: V

Best Arabidopsis Sequence Match ( AT5G28740.1 )
(BLAST)

001: MAISKDLYPS QEDLLYEEEL LRNQFSLKLW WRYLIAKAES PFKKRFIIYE RALKALPGSY KLWYAYLRER LDIVRNLPVT HPQYDSLNNT FERGLVTMHK
101: MPRIWVMYLQ TLTVQQLITR TRRTFDRALC ALPVTQHDRI WEPYLVFVSQ NGIPIETSLR VYRRYLMYDP SHIEEFIEFL VKSERWQESA ERLASVLNDD
201: KFYSIKGKTK HKLWLELCEL LVHHANVISG LNVDAIIRGG IRKFTDEVGM LWTSLADYYI RKNLLEKARD IYEEGMMKVV TVRDFSVIFD VYSRFEESTV
301: AKKMEMMSSS DEEDENEENG VEDDEEDVRL NFNLSVKELQ RKILNGFWLN DDNDVDLRLA RLEELMNRRP ALANSVLLRQ NPHNVEQWHR RVKIFEGNAA
401: KQILTYTEAV RTVDPMKAVG KPHTLWVAFA KLYENHKDLV NTRVIFDKAV QVNYKTVDHL ASVWCEWAEM ELRHKNFKGA LELMRRATAV PTVEVRRRVA
501: ADGNEPVQMK LHRSLRLWSF YVDLEESLGT LESTRAVYEK ILDLRIATPQ IIMNYAFLLE ENKYFEDAFK VYERGVKIFK YPHVKDIWVT YLTKFVKRYG
601: KTKLERAREL FEHAVSMAPS DAVRTLYLQY AKLEEDYGLA KRAMKVYEEA TKKVPEGQKL EMYEIYISRA AEIFGVPRTR EIYEQAIESG LPHKDVKIMC
701: IKFAELERSL GEIDRARALY KYSSQFADPR SDPEFWNKWH EFEVQHGNED TYREMLRIKR SVSASYSQTH FILPENMMQK DKLLDVEDAK GELKRAGLPE
801: DEMAALERQL LSTTTPTEPA KDGGRRVGFV SAGVISQSGE NEGKPVTGNG EDIELPDESD DESDGDDHVE ISQKEVPAAV FGGLARKRDE DGEEAGEDGA
901: AQKLGALERI KRQKLNQ

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LKU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.