CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48662	Canola	cytosol, nucleus, plastid	13.58	38.71
CDY14354	Canola	nucleus	15.09	27.4
CDY68456	Canola	cytosol	13.58	25.9
CDY33886	Canola	cytosol	41.13	12.63
CDY05604	Canola	cytosol	40.75	12.57
GSMUA_Achr9P04370_001	Banana	cytosol	35.09	11.7
Os01t0686600-01	Rice	nucleus	16.6	11.11
PGSC0003DMT400017726	Potato	cytosol	33.96	9.84
Solyc01g086990.2.1	Tomato	cytosol, nucleus	33.96	9.83
HORVU2Hr1G025180.1	Barley	cytosol	34.34	9.77
TraesCS2B01G167600.1	Wheat	cytosol	34.34	9.76
TraesCS2D01G145800.1	Wheat	cytosol	34.34	9.75
TraesCS2A01G142400.1	Wheat	cytosol, nucleus	34.34	9.75
Os07t0644300-02	Rice	nucleus	33.21	9.45
EER99801	Sorghum	cytosol, plastid	32.83	9.33
Zm00001d022335_P002	Maize	plasma membrane	32.45	9.21
Zm00001d007043_P003	Maize	plastid	31.7	9.06
HORVU5Hr1G069290.1	Barley	cytosol	26.42	8.95
Os06t0235800-00	Rice	nucleus	26.79	8.86
EER89493	Sorghum	cytosol	26.04	8.81
TraesCS7D01G193900.1	Wheat	cytosol	25.66	8.77
TraesCS7A01G192600.1	Wheat	cytosol	25.28	8.77
TraesCS4B01G183500.1	Wheat	cytosol	25.28	8.68
CDX86208	Canola	cytosol	6.79	8.57
HORVU7Hr1G039410.1	Barley	cytosol	24.91	8.29
TraesCS7B01G098000.1	Wheat	cytosol	22.26	7.37
VIT_00s0404g00060.t01	Wine grape	cytosol	20.75	5.8
CDY33383	Canola	cytosol	6.04	5.76
CDY54766	Canola	nucleus	1.89	5.38
CDY48663	Canola	mitochondrion	1.13	2.38

Protein Annotations

EnsemblPlants:CDX73271	EnsemblPlantsGene:GSBRNA2T00106328001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR11246	PANTHER:PTHR11246:SF5	ProteinID:CDX73271
ProteinID:CDX73271.1	SUPFAM:SSF48452	UniParc:UPI0004EEDAFE	MapMan:35.2	:	:

Description

BnaC05g28350D

Coordinates

chrLK031798:+:553786..555660

Molecular Weight (calculated)

31221.6 Da

IEP (calculated)

5.138

GRAVY (calculated)

-0.274

Length

265 amino acids

Sequence
(BLAST)

001: MLVLSLIRFI PSTRIGEVHT DAPEINYDKF MVRRYDHLQV LVNPNLELPA VYEKILDFRI TTPKIILNYV FLLEENKYFE NAFDMYERGV KIFKYFMLKT
101: YGNLSYKVCQ EIWEDKAERA IELFEHAAYM MLSVRTLYLQ YAKLEEDYGM AKQAMKVYEE ATKKVPECQR VEMCEIYISH AAEIFCDRAV YKYVSHYADP
201: RSDPEFKAAH VPNVYHSYIK RWCKKTGVCE PVTGNVEGTE LLEECDDESV GEDKVEIAHK EVLVF

Best Arabidopsis Sequence Match ( AT5G28740.1 )
(BLAST)

001: MAISKDLYPS QEDLLYEEEL LRNQFSLKLW WRYLIAKAES PFKKRFIIYE RALKALPGSY KLWYAYLRER LDIVRNLPVT HPQYDSLNNT FERGLVTMHK
101: MPRIWVMYLQ TLTVQQLITR TRRTFDRALC ALPVTQHDRI WEPYLVFVSQ NGIPIETSLR VYRRYLMYDP SHIEEFIEFL VKSERWQESA ERLASVLNDD
201: KFYSIKGKTK HKLWLELCEL LVHHANVISG LNVDAIIRGG IRKFTDEVGM LWTSLADYYI RKNLLEKARD IYEEGMMKVV TVRDFSVIFD VYSRFEESTV
301: AKKMEMMSSS DEEDENEENG VEDDEEDVRL NFNLSVKELQ RKILNGFWLN DDNDVDLRLA RLEELMNRRP ALANSVLLRQ NPHNVEQWHR RVKIFEGNAA
401: KQILTYTEAV RTVDPMKAVG KPHTLWVAFA KLYENHKDLV NTRVIFDKAV QVNYKTVDHL ASVWCEWAEM ELRHKNFKGA LELMRRATAV PTVEVRRRVA
501: ADGNEPVQMK LHRSLRLWSF YVDLEESLGT LESTRAVYEK ILDLRIATPQ IIMNYAFLLE ENKYFEDAFK VYERGVKIFK YPHVKDIWVT YLTKFVKRYG
601: KTKLERAREL FEHAVSMAPS DAVRTLYLQY AKLEEDYGLA KRAMKVYEEA TKKVPEGQKL EMYEIYISRA AEIFGVPRTR EIYEQAIESG LPHKDVKIMC
701: IKFAELERSL GEIDRARALY KYSSQFADPR SDPEFWNKWH EFEVQHGNED TYREMLRIKR SVSASYSQTH FILPENMMQK DKLLDVEDAK GELKRAGLPE
801: DEMAALERQL LSTTTPTEPA KDGGRRVGFV SAGVISQSGE NEGKPVTGNG EDIELPDESD DESDGDDHVE ISQKEVPAAV FGGLARKRDE DGEEAGEDGA
901: AQKLGALERI KRQKLNQ

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LKU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.