Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
19621931
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER99801 | Sorghum | cytosol, plastid | 91.19 | 91.09 |
| Zm00001d007043_P003 | Maize | plastid | 89.47 | 89.86 |
| Zm00001d022335_P002 | Maize | plasma membrane | 90.01 | 89.72 |
| TraesCS2A01G142400.1 | Wheat | cytosol, nucleus | 88.94 | 88.75 |
| TraesCS2B01G167600.1 | Wheat | cytosol | 88.83 | 88.73 |
| TraesCS2D01G145800.1 | Wheat | cytosol | 88.61 | 88.42 |
| HORVU2Hr1G025180.1 | Barley | cytosol | 88.4 | 88.4 |
| GSMUA_Achr9P04370_001 | Banana | cytosol | 61.01 | 71.45 |
| KRH10763 | Soybean | cytosol | 67.56 | 68.52 |
| Solyc03g044040.1.1 | Tomato | cytosol | 13.86 | 67.89 |
| KRH21565 | Soybean | nucleus | 66.92 | 67.79 |
| PGSC0003DMT400017726 | Potato | cytosol | 66.49 | 67.65 |
| Solyc01g086990.2.1 | Tomato | cytosol, nucleus | 66.27 | 67.36 |
| CDY33886 | Canola | cytosol | 61.98 | 66.86 |
| CDY05604 | Canola | cytosol | 61.22 | 66.36 |
| Bra020619.1-P | Field mustard | cytosol | 64.55 | 65.83 |
| AT5G28740.1 | Thale cress | cytosol | 64.34 | 65.32 |
| CDY48662 | Canola | cytosol, nucleus, plastid | 6.23 | 62.37 |
| VIT_00s0404g00060.t01 | Wine grape | cytosol | 58.22 | 57.17 |
| CDX86208 | Canola | cytosol | 11.82 | 52.38 |
| CDY48663 | Canola | mitochondrion | 6.98 | 51.59 |
| Bra010008.1-P | Field mustard | cytosol, nucleus, plastid | 14.07 | 50.58 |
| Os06t0235800-00 | Rice | nucleus | 39.1 | 45.44 |
| CDY54766 | Canola | nucleus | 4.4 | 44.09 |
| Bra027126.1-P | Field mustard | endoplasmic reticulum, golgi | 6.98 | 42.21 |
| Bra032990.1-P | Field mustard | cytosol, nucleus, plastid | 13.96 | 41.01 |
| CDY68456 | Canola | cytosol | 5.16 | 34.53 |
| CDX73271 | Canola | cytosol | 9.45 | 33.21 |
| Os01t0686600-01 | Rice | nucleus | 13.96 | 32.83 |
| Solyc03g044030.1.1 | Tomato | nucleus | 11.39 | 29.36 |
| Bra003036.1-P | Field mustard | nucleus | 4.3 | 23.95 |
| CDY14354 | Canola | nucleus | 3.22 | 20.55 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:16.4.5.2.5 | EntrezGene:4344088 | EMBL:AK066726 | EMBL:AK101483 | ProteinID:BAC07006.1 |
| ProteinID:BAD30261.1 | ProteinID:BAF22362.1 | ProteinID:BAT02888.1 | GO:GO:0000349 | GO:GO:0000974 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0071010 | GO:GO:0071012 | GO:GO:0071013 | GO:GO:0071014 | InterPro:HAT | InterPro:IPR011990 |
| InterPro:IPR013026 | EnsemblPlantsGene:Os07g0644300 | EnsemblPlants:Os07t0644300-02 | PFscan:PS50293 | PANTHER:PTHR11246 | PANTHER:PTHR11246:SF5 |
| UniProt:Q8LIB1 | SMART:SM00386 | SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | UniParc:UPI00000AC283 |
| RefSeq:XP_015647551.1 | SEG:seg | : | : | : | : |
Description
XAB2Similar to XPA-binding protein 2 (Adapter protein ATH-55). (Os07t0644300-02)
Coordinates
chr7:-:26819447..26824258
Molecular Weight (calculated)
107062.0 Da
IEP (calculated)
6.024
GRAVY (calculated)
-0.539
Length
931 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSPAGGPVA VAAASAAAAE ALGISPEMYP TEDDLAYEEE ILREPFKLKG WWRYLVARAA APFAKRAVIY ERALKALPGS YKLWHAYLRE RLDHARPHPI
101: SHHAYASLNN TFERALATMH KMPRVWVLYL TSLLDQRLLT RARRAFDRAL RALPVTQHDR IWPLYLRLAS LPACPVETSL RVFRRYLQYD PSHAEDFIDF
201: LISANRWQEA ADRLASVLND DGFRSVKGKT QHQLWLELCE ILTKHADEVA GLKVDAILRG GIRKFTDEVG KLWTSLADYY VRRTLYEKAR DVFEEGVASV
301: MTVQEFSVVF EAYTQFEQSM LAAKLEAAEE EGAGSEGEEE AGRKNGMDKL SKKFLADCWL NDEDDTDLRL ARFERLLDRR PELLSSVLLR QNPHNVEEWH
401: RRVKLFEKDP TRQVATYVEA VKTVDPMKAA GKPHTLWVAF AKMYEKHNRL DSAEEIFKKA TQVNYKAVDH LASIWCEWAE MELRHSNFDK AIELMRQATA
501: EPSVEVKRRA AAEGDEPVQL KVHKSLKLWS FYVDLEESLG TLESTRAVYE RILDLRIATP QIVLNYAYLL EENKYFEDAF KVYERGVKIF KYPHVKDIWV
601: TYLTKFVRRY QRSKLERARE LFDEAVKQAP PQEKKVLYLQ YAKLEEDYGL AKRAMNVYDE AVRAVPNSEK MSMYEIYIAR AAELFGVPRT RQIYEQAIES
701: GLPDRDVMTM CMKFAELERN LGEIDRARAI YVHASNYADP NSHPEFWNKW NEFEIQHGNE DTFREMLRIK RTVAASRSQT HFILPEYLMQ RDQRLNLDEA
801: VDTLKRAGVP EDEMANLERQ LAPGPSTAPP APSTATAPAN RMMNFVSAGV QAQAESSSRQ QQAAATNNED IELPDESDEE EDDVQIAEKS VPAAVFGELG
901: KRAAENREEE SSGAQENEQL GALERIKRRR Q
101: SHHAYASLNN TFERALATMH KMPRVWVLYL TSLLDQRLLT RARRAFDRAL RALPVTQHDR IWPLYLRLAS LPACPVETSL RVFRRYLQYD PSHAEDFIDF
201: LISANRWQEA ADRLASVLND DGFRSVKGKT QHQLWLELCE ILTKHADEVA GLKVDAILRG GIRKFTDEVG KLWTSLADYY VRRTLYEKAR DVFEEGVASV
301: MTVQEFSVVF EAYTQFEQSM LAAKLEAAEE EGAGSEGEEE AGRKNGMDKL SKKFLADCWL NDEDDTDLRL ARFERLLDRR PELLSSVLLR QNPHNVEEWH
401: RRVKLFEKDP TRQVATYVEA VKTVDPMKAA GKPHTLWVAF AKMYEKHNRL DSAEEIFKKA TQVNYKAVDH LASIWCEWAE MELRHSNFDK AIELMRQATA
501: EPSVEVKRRA AAEGDEPVQL KVHKSLKLWS FYVDLEESLG TLESTRAVYE RILDLRIATP QIVLNYAYLL EENKYFEDAF KVYERGVKIF KYPHVKDIWV
601: TYLTKFVRRY QRSKLERARE LFDEAVKQAP PQEKKVLYLQ YAKLEEDYGL AKRAMNVYDE AVRAVPNSEK MSMYEIYIAR AAELFGVPRT RQIYEQAIES
701: GLPDRDVMTM CMKFAELERN LGEIDRARAI YVHASNYADP NSHPEFWNKW NEFEIQHGNE DTFREMLRIK RTVAASRSQT HFILPEYLMQ RDQRLNLDEA
801: VDTLKRAGVP EDEMANLERQ LAPGPSTAPP APSTATAPAN RMMNFVSAGV QAQAESSSRQ QQAAATNNED IELPDESDEE EDDVQIAEKS VPAAVFGELG
901: KRAAENREEE SSGAQENEQL GALERIKRRR Q
001: MAISKDLYPS QEDLLYEEEL LRNQFSLKLW WRYLIAKAES PFKKRFIIYE RALKALPGSY KLWYAYLRER LDIVRNLPVT HPQYDSLNNT FERGLVTMHK
101: MPRIWVMYLQ TLTVQQLITR TRRTFDRALC ALPVTQHDRI WEPYLVFVSQ NGIPIETSLR VYRRYLMYDP SHIEEFIEFL VKSERWQESA ERLASVLNDD
201: KFYSIKGKTK HKLWLELCEL LVHHANVISG LNVDAIIRGG IRKFTDEVGM LWTSLADYYI RKNLLEKARD IYEEGMMKVV TVRDFSVIFD VYSRFEESTV
301: AKKMEMMSSS DEEDENEENG VEDDEEDVRL NFNLSVKELQ RKILNGFWLN DDNDVDLRLA RLEELMNRRP ALANSVLLRQ NPHNVEQWHR RVKIFEGNAA
401: KQILTYTEAV RTVDPMKAVG KPHTLWVAFA KLYENHKDLV NTRVIFDKAV QVNYKTVDHL ASVWCEWAEM ELRHKNFKGA LELMRRATAV PTVEVRRRVA
501: ADGNEPVQMK LHRSLRLWSF YVDLEESLGT LESTRAVYEK ILDLRIATPQ IIMNYAFLLE ENKYFEDAFK VYERGVKIFK YPHVKDIWVT YLTKFVKRYG
601: KTKLERAREL FEHAVSMAPS DAVRTLYLQY AKLEEDYGLA KRAMKVYEEA TKKVPEGQKL EMYEIYISRA AEIFGVPRTR EIYEQAIESG LPHKDVKIMC
701: IKFAELERSL GEIDRARALY KYSSQFADPR SDPEFWNKWH EFEVQHGNED TYREMLRIKR SVSASYSQTH FILPENMMQK DKLLDVEDAK GELKRAGLPE
801: DEMAALERQL LSTTTPTEPA KDGGRRVGFV SAGVISQSGE NEGKPVTGNG EDIELPDESD DESDGDDHVE ISQKEVPAAV FGGLARKRDE DGEEAGEDGA
901: AQKLGALERI KRQKLNQ
101: MPRIWVMYLQ TLTVQQLITR TRRTFDRALC ALPVTQHDRI WEPYLVFVSQ NGIPIETSLR VYRRYLMYDP SHIEEFIEFL VKSERWQESA ERLASVLNDD
201: KFYSIKGKTK HKLWLELCEL LVHHANVISG LNVDAIIRGG IRKFTDEVGM LWTSLADYYI RKNLLEKARD IYEEGMMKVV TVRDFSVIFD VYSRFEESTV
301: AKKMEMMSSS DEEDENEENG VEDDEEDVRL NFNLSVKELQ RKILNGFWLN DDNDVDLRLA RLEELMNRRP ALANSVLLRQ NPHNVEQWHR RVKIFEGNAA
401: KQILTYTEAV RTVDPMKAVG KPHTLWVAFA KLYENHKDLV NTRVIFDKAV QVNYKTVDHL ASVWCEWAEM ELRHKNFKGA LELMRRATAV PTVEVRRRVA
501: ADGNEPVQMK LHRSLRLWSF YVDLEESLGT LESTRAVYEK ILDLRIATPQ IIMNYAFLLE ENKYFEDAFK VYERGVKIFK YPHVKDIWVT YLTKFVKRYG
601: KTKLERAREL FEHAVSMAPS DAVRTLYLQY AKLEEDYGLA KRAMKVYEEA TKKVPEGQKL EMYEIYISRA AEIFGVPRTR EIYEQAIESG LPHKDVKIMC
701: IKFAELERSL GEIDRARALY KYSSQFADPR SDPEFWNKWH EFEVQHGNED TYREMLRIKR SVSASYSQTH FILPENMMQK DKLLDVEDAK GELKRAGLPE
801: DEMAALERQL LSTTTPTEPA KDGGRRVGFV SAGVISQSGE NEGKPVTGNG EDIELPDESD DESDGDDHVE ISQKEVPAAV FGGLARKRDE DGEEAGEDGA
901: AQKLGALERI KRQKLNQ
Arabidopsis Description
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LKU3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.