Factsheet for Solyc01g086990.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017726	Potato	cytosol	98.8	98.91
Solyc03g044040.1.1	Tomato	cytosol	17.58	84.74
KRH21565	Soybean	nucleus	82.1	81.83
KRH10763	Soybean	cytosol	81.66	81.48
GSMUA_Achr9P04370_001	Banana	cytosol	63.1	72.7
VIT_00s0404g00060.t01	Wine grape	cytosol	71.83	69.41
Os07t0644300-02	Rice	nucleus	67.36	66.27
Zm00001d007043_P003	Maize	plastid	66.92	66.13
TraesCS2D01G145800.1	Wheat	cytosol	67.14	65.92
EER99801	Sorghum	cytosol, plastid	67.03	65.88
TraesCS2A01G142400.1	Wheat	cytosol, nucleus	67.03	65.81
TraesCS2B01G167600.1	Wheat	cytosol	66.92	65.77
Zm00001d022335_P002	Maize	plasma membrane	66.92	65.63
HORVU2Hr1G025180.1	Barley	cytosol	66.7	65.63
CDX86208	Canola	cytosol	13.1	57.14
Bra010008.1-P	Field mustard	cytosol, nucleus, plastid	15.72	55.6
Bra032990.1-P	Field mustard	cytosol, nucleus, plastid	15.94	46.06
Solyc03g044030.1.1	Tomato	nucleus	17.03	43.21
Os06t0235800-00	Rice	nucleus	33.73	38.58
EER89493	Sorghum	cytosol	32.86	38.44
TraesCS7A01G192600.1	Wheat	cytosol	31.88	38.22
TraesCS4B01G183500.1	Wheat	cytosol	32.1	38.08
HORVU7Hr1G039410.1	Barley	cytosol	32.42	37.31
TraesCS7D01G193900.1	Wheat	cytosol	31.44	37.16
HORVU5Hr1G069290.1	Barley	cytosol	31.55	36.96
TraesCS7B01G098000.1	Wheat	cytosol	30.68	35.08
CDX73271	Canola	cytosol	9.83	33.96
Os01t0686600-01	Rice	nucleus	12.45	28.79
Bra003036.1-P	Field mustard	nucleus	4.26	23.35
CDY14354	Canola	nucleus	3.06	19.18
Solyc12g040310.1.1	Tomato	mitochondrion	0.66	9.09

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.4.5.2.5	GO:GO:0000349	GO:GO:0000974	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0071010
GO:GO:0071012	GO:GO:0071013	GO:GO:0071014	InterPro:HAT	InterPro:IPR011990	InterPro:IPR013026
UniProt:K4AY92	PFscan:PS50293	PANTHER:PTHR11246	PANTHER:PTHR11246:SF5	SMART:SM00386	SUPFAM:SSF48452
EnsemblPlantsGene:Solyc01g086990.2	EnsemblPlants:Solyc01g086990.2.1	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002762F88	SEG:seg

Description

No Description!

Coordinates

chr1:+:81914008..81922504

Molecular Weight (calculated)

106743.0 Da

IEP (calculated)

5.936

GRAVY (calculated)

-0.539

Length

916 amino acids

Sequence
(BLAST)

001: MSIPKELYPT EDDLPYEEEI LRNPFSLKQW WRYLVARADA PFTKRRVLYE RALQALPGSY KIWHAYLRER LELVRNLPIN HSLYQALNNT FERALVTMHK
101: MPKIWIMYLV SLTQQKLVTR TRRTFDRALC ALPVTQHDRI WEHYLVFVSQ RGIPIETSLR VYRRYLKYDP SHIEDLLEFL LNSELWQEAA ERLAGVLNDD
201: RFYSIKGKTK HRLWLELCDL LTQHATEISG LNVDAIIRGG IKKFTDEVGR LWTSLADYYI RRKLVEKARD IFEEGMTTVV TVRDFSVIFD AYSQFEESML
301: ALKMEEMSDS EVEDEGTNGE VGAEEDVDEE DDRLNVAKLE KKLKEFWLND DKDIDLRLAR LEHLMDRRPE LANSVLLRQN PHNVEQWHRR VKLFEGNPTK
401: QILTFTEAVR TIDPMKAVGK PHTLWVAFAK LYENHKDIAN ARVIFDKAVQ VNYKTVDHLA SVWCEWAEME LRHRNFKGAL ELMRRATAEP TVEVKRRVAA
501: DGNEPVQIKL HKSLRLWLLF VDLEESLGSL ESTRVVYERI LDLRIATPQI IINYAVLLED HKYFEDAFKV YERGVKIFKY PHVKDIWVTY LSKFVKRYGK
601: SKLERARELF EHAVEQTPAD AVKPLYLQYA KLEEDYGLAK RAMRVYDQAT KAVPANEKLS MYEIYIARAA EIFGVPRTRE IYEQAIESGL PDKDVKVMCL
701: KYAELEKSLG EIDRARALYK HSSQFADPRS DPDFWNKWHE FEVQHGNEDT FREMLRVKRS VSASYSQTHF ILPEYLMQKD QMQTLEEAKD VLKKAGIADD
801: EMAALERQLV PPENGTKSKE ESRVVGFVSA GVVESNGQKV TANNEDIELP EESDSEEDDD KVEIALKEVP DAVFGGLIRK RDEGDEAEDN STAKNKDSDG
901: PLGALERIKR RKQAAS

Best Arabidopsis Sequence Match ( AT5G28740.1 )
(BLAST)

001: MAISKDLYPS QEDLLYEEEL LRNQFSLKLW WRYLIAKAES PFKKRFIIYE RALKALPGSY KLWYAYLRER LDIVRNLPVT HPQYDSLNNT FERGLVTMHK
101: MPRIWVMYLQ TLTVQQLITR TRRTFDRALC ALPVTQHDRI WEPYLVFVSQ NGIPIETSLR VYRRYLMYDP SHIEEFIEFL VKSERWQESA ERLASVLNDD
201: KFYSIKGKTK HKLWLELCEL LVHHANVISG LNVDAIIRGG IRKFTDEVGM LWTSLADYYI RKNLLEKARD IYEEGMMKVV TVRDFSVIFD VYSRFEESTV
301: AKKMEMMSSS DEEDENEENG VEDDEEDVRL NFNLSVKELQ RKILNGFWLN DDNDVDLRLA RLEELMNRRP ALANSVLLRQ NPHNVEQWHR RVKIFEGNAA
401: KQILTYTEAV RTVDPMKAVG KPHTLWVAFA KLYENHKDLV NTRVIFDKAV QVNYKTVDHL ASVWCEWAEM ELRHKNFKGA LELMRRATAV PTVEVRRRVA
501: ADGNEPVQMK LHRSLRLWSF YVDLEESLGT LESTRAVYEK ILDLRIATPQ IIMNYAFLLE ENKYFEDAFK VYERGVKIFK YPHVKDIWVT YLTKFVKRYG
601: KTKLERAREL FEHAVSMAPS DAVRTLYLQY AKLEEDYGLA KRAMKVYEEA TKKVPEGQKL EMYEIYISRA AEIFGVPRTR EIYEQAIESG LPHKDVKIMC
701: IKFAELERSL GEIDRARALY KYSSQFADPR SDPEFWNKWH EFEVQHGNED TYREMLRIKR SVSASYSQTH FILPENMMQK DKLLDVEDAK GELKRAGLPE
801: DEMAALERQL LSTTTPTEPA KDGGRRVGFV SAGVISQSGE NEGKPVTGNG EDIELPDESD DESDGDDHVE ISQKEVPAAV FGGLARKRDE DGEEAGEDGA
901: AQKLGALERI KRQKLNQ

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LKU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.