Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G145800.1 | Wheat | cytosol | 99.68 | 99.68 |
| TraesCS2B01G167600.1 | Wheat | cytosol | 99.36 | 99.46 |
| HORVU2Hr1G025180.1 | Barley | cytosol | 98.29 | 98.5 |
| Os07t0644300-02 | Rice | nucleus | 88.75 | 88.94 |
| EER99801 | Sorghum | cytosol, plastid | 87.25 | 87.34 |
| Zm00001d007043_P003 | Maize | plastid | 86.28 | 86.84 |
| Zm00001d022335_P002 | Maize | plasma membrane | 86.28 | 86.19 |
| GSMUA_Achr9P04370_001 | Banana | cytosol | 60.66 | 71.19 |
| PGSC0003DMT400017726 | Potato | cytosol | 66.13 | 67.43 |
| Solyc03g044040.1.1 | Tomato | cytosol | 13.72 | 67.37 |
| KRH10763 | Soybean | cytosol | 66.24 | 67.32 |
| Solyc01g086990.2.1 | Tomato | cytosol, nucleus | 65.81 | 67.03 |
| KRH21565 | Soybean | nucleus | 65.81 | 66.81 |
| CDY33886 | Canola | cytosol | 60.56 | 65.47 |
| AT5G28740.1 | Thale cress | cytosol | 63.67 | 64.78 |
| CDY05604 | Canola | cytosol | 59.59 | 64.73 |
| Bra020619.1-P | Field mustard | cytosol | 63.24 | 64.62 |
| CDY48662 | Canola | cytosol, nucleus, plastid | 6.22 | 62.37 |
| VIT_00s0404g00060.t01 | Wine grape | cytosol | 56.7 | 55.8 |
| CDX86208 | Canola | cytosol | 11.58 | 51.43 |
| CDY48663 | Canola | mitochondrion | 6.75 | 50.0 |
| Bra010008.1-P | Field mustard | cytosol, nucleus, plastid | 13.29 | 47.88 |
| TraesCS7A01G192600.1 | Wheat | cytosol | 36.12 | 44.11 |
| CDY54766 | Canola | nucleus | 3.97 | 39.78 |
| Bra027126.1-P | Field mustard | endoplasmic reticulum, golgi | 6.54 | 39.61 |
| Bra032990.1-P | Field mustard | cytosol, nucleus, plastid | 13.4 | 39.43 |
| CDY68456 | Canola | cytosol | 5.36 | 35.97 |
| CDX73271 | Canola | cytosol | 9.75 | 34.34 |
| Solyc03g044030.1.1 | Tomato | nucleus | 11.15 | 28.81 |
| Bra003036.1-P | Field mustard | nucleus | 4.29 | 23.95 |
| CDY14354 | Canola | nucleus | 3.22 | 20.55 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G142400.1 | EnsemblPlantsGene:TraesCS2A01G142400 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:HAT |
| InterPro:IPR011990 | InterPro:IPR013026 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR11246 | PANTHER:PTHR11246:SF5 |
| PFscan:PS50293 | SEG:seg | SMART:SM00386 | SUPFAM:SSF48452 | MapMan:16.4.5.2.5 | : |
Description
No Description!
Coordinates
chr2A:+:87876702..87882095
Molecular Weight (calculated)
107233.0 Da
IEP (calculated)
6.174
GRAVY (calculated)
-0.515
Length
933 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSAAAGPAE VALAPPAKAA ALPFAGISPD LYPTEDDLPY EEEILREPFK LKGWWRYLVA RAAAPFAKRA VIYERALKAL PGSYKLWHAY LRERLDHVRP
101: HPISHPAYAS LNNTFERALA TMHKMPRVWV LYLTSLLDQR LLTRGRRNFD RALRALPVTQ HDRIWPLYLR LASLPACPVE TSFRVFRRYL QFDPSHAEDF
201: IEFLVSAERW QEAADRLASV LNDDGFRSVK GKTRHQLWLE LCDILTKHAD EVAGLKVDAI LRGGIRKFTD EVGKLWTSLA DYYVRRTLYE KARDVFEEGV
301: SSVMTVQEFS VVFEAYTQFE QSMLAAKLEA AEEDGAAGSD EGEKGGKKNK VEKLEKELAA CWLNDEDDTD LRLARFERLL DRRPELLSSV LLRQNPHNVE
401: EWHRRVKLFD KDPAKQVATY VEAVKTVDPM KAVGKPHTLW VAFAKMYEKH NRLDSAEDIF KKATQVNYKA VDHLATIWCE WAEMELRNQH FDKAIELMRL
501: ATAEPSVEVK RRAAAEGDEP VQLKLHKSLK LWSIYVDLEE SLGSLETTRA VYERILDLRI ATPQIILNYA FLLEENKYFE DAFKVYERGV KIFKYPHVKD
601: IWVTYLTKFV KRYQRSKLER ARELFTEAVE KAPPHEKKAL YLQYAKLEED YGLAKRAMNV YDEAVRAVPN TEKMSMYEIY IARAAELFGV PRTRQIYEQA
701: IESGLPDKDV MVMCMKFAEL ERNLGEIDRS RAIYIHASNY ADPNSHPEFW KKWNDFEIQH GNEDTFREML RIKRTVAASR SQTHFILPEY LMQRDQRLNM
801: DEAVDTLTRA GVPQDEMAAL ERQLASGPSP APAAAPSTST TPANRMMNFV SAGVEARAES STQQAAANNE DIELPDEESD EEDDVQIAER AVPEAVFGEL
901: GKRAAESREE SSSAQENNEQ QLGALERIKR RRQ
101: HPISHPAYAS LNNTFERALA TMHKMPRVWV LYLTSLLDQR LLTRGRRNFD RALRALPVTQ HDRIWPLYLR LASLPACPVE TSFRVFRRYL QFDPSHAEDF
201: IEFLVSAERW QEAADRLASV LNDDGFRSVK GKTRHQLWLE LCDILTKHAD EVAGLKVDAI LRGGIRKFTD EVGKLWTSLA DYYVRRTLYE KARDVFEEGV
301: SSVMTVQEFS VVFEAYTQFE QSMLAAKLEA AEEDGAAGSD EGEKGGKKNK VEKLEKELAA CWLNDEDDTD LRLARFERLL DRRPELLSSV LLRQNPHNVE
401: EWHRRVKLFD KDPAKQVATY VEAVKTVDPM KAVGKPHTLW VAFAKMYEKH NRLDSAEDIF KKATQVNYKA VDHLATIWCE WAEMELRNQH FDKAIELMRL
501: ATAEPSVEVK RRAAAEGDEP VQLKLHKSLK LWSIYVDLEE SLGSLETTRA VYERILDLRI ATPQIILNYA FLLEENKYFE DAFKVYERGV KIFKYPHVKD
601: IWVTYLTKFV KRYQRSKLER ARELFTEAVE KAPPHEKKAL YLQYAKLEED YGLAKRAMNV YDEAVRAVPN TEKMSMYEIY IARAAELFGV PRTRQIYEQA
701: IESGLPDKDV MVMCMKFAEL ERNLGEIDRS RAIYIHASNY ADPNSHPEFW KKWNDFEIQH GNEDTFREML RIKRTVAASR SQTHFILPEY LMQRDQRLNM
801: DEAVDTLTRA GVPQDEMAAL ERQLASGPSP APAAAPSTST TPANRMMNFV SAGVEARAES STQQAAANNE DIELPDEESD EEDDVQIAER AVPEAVFGEL
901: GKRAAESREE SSSAQENNEQ QLGALERIKR RRQ
001: MAISKDLYPS QEDLLYEEEL LRNQFSLKLW WRYLIAKAES PFKKRFIIYE RALKALPGSY KLWYAYLRER LDIVRNLPVT HPQYDSLNNT FERGLVTMHK
101: MPRIWVMYLQ TLTVQQLITR TRRTFDRALC ALPVTQHDRI WEPYLVFVSQ NGIPIETSLR VYRRYLMYDP SHIEEFIEFL VKSERWQESA ERLASVLNDD
201: KFYSIKGKTK HKLWLELCEL LVHHANVISG LNVDAIIRGG IRKFTDEVGM LWTSLADYYI RKNLLEKARD IYEEGMMKVV TVRDFSVIFD VYSRFEESTV
301: AKKMEMMSSS DEEDENEENG VEDDEEDVRL NFNLSVKELQ RKILNGFWLN DDNDVDLRLA RLEELMNRRP ALANSVLLRQ NPHNVEQWHR RVKIFEGNAA
401: KQILTYTEAV RTVDPMKAVG KPHTLWVAFA KLYENHKDLV NTRVIFDKAV QVNYKTVDHL ASVWCEWAEM ELRHKNFKGA LELMRRATAV PTVEVRRRVA
501: ADGNEPVQMK LHRSLRLWSF YVDLEESLGT LESTRAVYEK ILDLRIATPQ IIMNYAFLLE ENKYFEDAFK VYERGVKIFK YPHVKDIWVT YLTKFVKRYG
601: KTKLERAREL FEHAVSMAPS DAVRTLYLQY AKLEEDYGLA KRAMKVYEEA TKKVPEGQKL EMYEIYISRA AEIFGVPRTR EIYEQAIESG LPHKDVKIMC
701: IKFAELERSL GEIDRARALY KYSSQFADPR SDPEFWNKWH EFEVQHGNED TYREMLRIKR SVSASYSQTH FILPENMMQK DKLLDVEDAK GELKRAGLPE
801: DEMAALERQL LSTTTPTEPA KDGGRRVGFV SAGVISQSGE NEGKPVTGNG EDIELPDESD DESDGDDHVE ISQKEVPAAV FGGLARKRDE DGEEAGEDGA
901: AQKLGALERI KRQKLNQ
101: MPRIWVMYLQ TLTVQQLITR TRRTFDRALC ALPVTQHDRI WEPYLVFVSQ NGIPIETSLR VYRRYLMYDP SHIEEFIEFL VKSERWQESA ERLASVLNDD
201: KFYSIKGKTK HKLWLELCEL LVHHANVISG LNVDAIIRGG IRKFTDEVGM LWTSLADYYI RKNLLEKARD IYEEGMMKVV TVRDFSVIFD VYSRFEESTV
301: AKKMEMMSSS DEEDENEENG VEDDEEDVRL NFNLSVKELQ RKILNGFWLN DDNDVDLRLA RLEELMNRRP ALANSVLLRQ NPHNVEQWHR RVKIFEGNAA
401: KQILTYTEAV RTVDPMKAVG KPHTLWVAFA KLYENHKDLV NTRVIFDKAV QVNYKTVDHL ASVWCEWAEM ELRHKNFKGA LELMRRATAV PTVEVRRRVA
501: ADGNEPVQMK LHRSLRLWSF YVDLEESLGT LESTRAVYEK ILDLRIATPQ IIMNYAFLLE ENKYFEDAFK VYERGVKIFK YPHVKDIWVT YLTKFVKRYG
601: KTKLERAREL FEHAVSMAPS DAVRTLYLQY AKLEEDYGLA KRAMKVYEEA TKKVPEGQKL EMYEIYISRA AEIFGVPRTR EIYEQAIESG LPHKDVKIMC
701: IKFAELERSL GEIDRARALY KYSSQFADPR SDPEFWNKWH EFEVQHGNED TYREMLRIKR SVSASYSQTH FILPENMMQK DKLLDVEDAK GELKRAGLPE
801: DEMAALERQL LSTTTPTEPA KDGGRRVGFV SAGVISQSGE NEGKPVTGNG EDIELPDESD DESDGDDHVE ISQKEVPAAV FGGLARKRDE DGEEAGEDGA
901: AQKLGALERI KRQKLNQ
Arabidopsis Description
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LKU3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.