Factsheet for VIT_00s0404g00060.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10763	Soybean	cytosol	72.26	74.62
KRH21565	Soybean	nucleus	72.26	74.54
Solyc01g086990.2.1	Tomato	cytosol, nucleus	69.41	71.83
PGSC0003DMT400017726	Potato	cytosol	69.2	71.69
AT5G28740.1	Thale cress	cytosol	66.46	68.7
GSMUA_Achr9P04370_001	Banana	cytosol	54.32	64.78
Zm00001d007043_P003	Maize	plastid	57.49	58.79
Os07t0644300-02	Rice	nucleus	57.17	58.22
EER99801	Sorghum	cytosol, plastid	57.07	58.05
Zm00001d022335_P002	Maize	plasma membrane	57.07	57.92
TraesCS2D01G145800.1	Wheat	cytosol	56.01	56.91
HORVU2Hr1G025180.1	Barley	cytosol	55.7	56.71
TraesCS2A01G142400.1	Wheat	cytosol, nucleus	55.8	56.7
TraesCS2B01G167600.1	Wheat	cytosol	55.7	56.65
Bra010008.1-P	Field mustard	cytosol, nucleus, plastid	13.82	50.58
CDX86208	Canola	cytosol	10.97	49.52
Bra032990.1-P	Field mustard	cytosol, nucleus, plastid	14.03	41.96
TraesCS7A01G192600.1	Wheat	cytosol	27.32	33.9
TraesCS4B01G183500.1	Wheat	cytosol	27.53	33.81
Os06t0235800-00	Rice	nucleus	28.48	33.71
EER89493	Sorghum	cytosol	27.43	33.21
TraesCS7D01G193900.1	Wheat	cytosol	26.69	32.65
HORVU7Hr1G039410.1	Barley	cytosol	27.32	32.54
HORVU5Hr1G069290.1	Barley	cytosol	26.16	31.71
TraesCS7B01G098000.1	Wheat	cytosol	25.84	30.59
Bra003036.1-P	Field mustard	nucleus	3.69	20.96
CDX73271	Canola	cytosol	5.8	20.75
Os01t0686600-01	Rice	nucleus	7.17	17.17
CDY14354	Canola	nucleus	2.64	17.12

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.4.5.2.5	ProteinID:CCB48406.1	ncoils:Coil	UniProt:F6H863	GO:GO:0000349
GO:GO:0000974	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0071010	GO:GO:0071012	GO:GO:0071013	GO:GO:0071014
InterPro:HAT	InterPro:IPR011990	PANTHER:PTHR11246	PANTHER:PTHR11246:SF5	SMART:SM00386	SUPFAM:SSF48452
TIGR:TC56427	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000210A6AD	ArrayExpress:VIT_00s0404g00060	EnsemblPlantsGene:VIT_00s0404g00060	EnsemblPlants:VIT_00s0404g00060.t01
unigene:Vvi.10554	SEG:seg	:	:	:	:

Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT5G28740](projected from arabidopsis_thaliana,AT5G28740)

Coordinates

chrUn:-:27719300..27731996

Molecular Weight (calculated)

105097.0 Da

IEP (calculated)

5.539

GRAVY (calculated)

-0.520

Length

948 amino acids

Sequence
(BLAST)

001: MAIAEELYPS QEDLLYEEEL LRNQFSLKLW WRYLIARSDS PFKKRFLIYE RALKALPGSY KLWYAYLRER LEIVRNLPIK HSQYETLNNT FERALVTMHK
101: MPRIWIMYLQ TLTDQELLTR TRRTFDRALC ALPVTQHDRI WEPYLVFVSK KGVPIETSLR VYRRYLKYDP THIEDFIEFL MNSGLWQEAA ERLAGVLNDD
201: QFYSIKGKTR HRLWLELCDL LTKHATDVSG LNVDAIIRGG IRKFTDEVGR LWTSLADYYI RRNLTEKARD IFEEGMTTVV TVRDFSVIFD AYSQFEESML
301: AYKMENMDSD EEEDDVQDND TDEEEDIRLD INLSVANFEK KILHGFWLHD FNDVDLRLAR LEHLMDRRPE LANSVLLRQN PHNVEQWHRR IKLFEGNPTK
401: QILTYTEAVR TVDPMKAVGK PHTLWVAFAK LYENHKDVAN ARVIFDKAVQ VNYKTLDNLA SVWCEWAEME LRHKNFKGAL ELMRRATAEP SVEVKRKVAA
501: DGNEPVQMKL HKSLRIXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XLEKQGSLTA DVKNFLLNLN SMIGHENSET LFLLDRHMYM
601: SGTHLEQENK NLEAYALMNT HINQIHWFVD VVMKHNLSVC NFFYRFAPAE SVKPLYMQYA KLEEDFGLAK RAMKVYDQAA KAVPNNEKLS MYEIYIARAS
701: EIFGIPKTRE IYEQAITSGV PDKDVKTMCM KYAELEKSLG EIDRARGIFV YASQLADPRS DADFWNKWHE FEVQHGNEDT FREMLRIKRS VSASYSQTHF
801: LLPEYLMQKD PKLNLDEAMD TLKQAGVPED EMAALERQLV PTANNTAAKE SSRKVGFVSA GVESQPDEGI KVTANHEDIE LPEESDSEDE KVEIAQKDIP
901: NAVFGGLVRK REEADGDGDG DEDGAASKDK DRDSQLGALE RIKRQRQA

Best Arabidopsis Sequence Match ( AT5G28740.1 )
(BLAST)

001: MAISKDLYPS QEDLLYEEEL LRNQFSLKLW WRYLIAKAES PFKKRFIIYE RALKALPGSY KLWYAYLRER LDIVRNLPVT HPQYDSLNNT FERGLVTMHK
101: MPRIWVMYLQ TLTVQQLITR TRRTFDRALC ALPVTQHDRI WEPYLVFVSQ NGIPIETSLR VYRRYLMYDP SHIEEFIEFL VKSERWQESA ERLASVLNDD
201: KFYSIKGKTK HKLWLELCEL LVHHANVISG LNVDAIIRGG IRKFTDEVGM LWTSLADYYI RKNLLEKARD IYEEGMMKVV TVRDFSVIFD VYSRFEESTV
301: AKKMEMMSSS DEEDENEENG VEDDEEDVRL NFNLSVKELQ RKILNGFWLN DDNDVDLRLA RLEELMNRRP ALANSVLLRQ NPHNVEQWHR RVKIFEGNAA
401: KQILTYTEAV RTVDPMKAVG KPHTLWVAFA KLYENHKDLV NTRVIFDKAV QVNYKTVDHL ASVWCEWAEM ELRHKNFKGA LELMRRATAV PTVEVRRRVA
501: ADGNEPVQMK LHRSLRLWSF YVDLEESLGT LESTRAVYEK ILDLRIATPQ IIMNYAFLLE ENKYFEDAFK VYERGVKIFK YPHVKDIWVT YLTKFVKRYG
601: KTKLERAREL FEHAVSMAPS DAVRTLYLQY AKLEEDYGLA KRAMKVYEEA TKKVPEGQKL EMYEIYISRA AEIFGVPRTR EIYEQAIESG LPHKDVKIMC
701: IKFAELERSL GEIDRARALY KYSSQFADPR SDPEFWNKWH EFEVQHGNED TYREMLRIKR SVSASYSQTH FILPENMMQK DKLLDVEDAK GELKRAGLPE
801: DEMAALERQL LSTTTPTEPA KDGGRRVGFV SAGVISQSGE NEGKPVTGNG EDIELPDESD DESDGDDHVE ISQKEVPAAV FGGLARKRDE DGEEAGEDGA
901: AQKLGALERI KRQKLNQ

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LKU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.