Factsheet for Os01t0686600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48662	Canola	cytosol, nucleus, plastid	8.59	36.56
Solyc03g044040.1.1	Tomato	cytosol	16.41	34.21
Os06t0235800-00	Rice	nucleus	38.13	18.85
CDY68456	Canola	cytosol	6.57	18.7
CDX73271	Canola	cytosol	11.11	16.6
Os07t0644300-02	Rice	nucleus	32.83	13.96
CDY05604	Canola	cytosol	29.8	13.74
CDY33886	Canola	cytosol	29.8	13.67
GSMUA_Achr9P04370_001	Banana	cytosol	27.02	13.46
KRH10763	Soybean	cytosol	30.56	13.18
KRH21565	Soybean	nucleus	30.56	13.17
Bra010008.1-P	Field mustard	cytosol, nucleus, plastid	8.59	13.13
Bra020619.1-P	Field mustard	cytosol	29.8	12.92
AT5G28740.1	Thale cress	cytosol	29.29	12.65
PGSC0003DMT400017726	Potato	cytosol	28.79	12.46
Solyc01g086990.2.1	Tomato	cytosol, nucleus	28.79	12.45
Bra032990.1-P	Field mustard	cytosol, nucleus, plastid	8.33	10.41
CDX86208	Canola	cytosol	5.3	10.0
Bra003036.1-P	Field mustard	nucleus	4.04	9.58
Bra027126.1-P	Field mustard	endoplasmic reticulum, golgi	3.54	9.09
CDY14354	Canola	nucleus	3.03	8.22
VIT_00s0404g00060.t01	Wine grape	cytosol	17.17	7.17
CDY48663	Canola	mitochondrion	2.27	7.14
Solyc03g044030.1.1	Tomato	nucleus	4.29	4.71
CDY54766	Canola	nucleus	1.01	4.3

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.2	ProteinID:BAF05822.1	ProteinID:BAS73757.1	GO:GO:0000349	GO:GO:0000974
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0071010	GO:GO:0071012	GO:GO:0071013	GO:GO:0071014	InterPro:HAT
InterPro:IPR011990	EnsemblPlantsGene:Os01g0686600	EnsemblPlants:Os01t0686600-01	PANTHER:PTHR11246	PANTHER:PTHR11246:SF5	UniProt:Q0JKA6
SMART:SM00386	SUPFAM:SSF48452	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0000DD8C8A	SEG:seg	:

Description

RNA-processing protein, HAT helix domain containing protein. (Os01t0686600-01)

Coordinates

chr1:+:28322583..28325080

Molecular Weight (calculated)

44078.4 Da

IEP (calculated)

11.705

GRAVY (calculated)

-0.733

Length

396 amino acids

Sequence
(BLAST)

001: MAAAVVAMPV ALALPSEADL PYEEDVLRDP HSIRPWRRYL AARAAAPLQE RAVIYERAVR ALPGSYKLWH AYLLERTAAA ARAKPHCGEH PANKAIALMR
101: QATAEPSAEV KLRAAAAAAG DDEPAQLKLH KSAKLWSFYV DLEESLGALA STRAAYEGAM AARAATPQMV INYASFLEER GYFEDSFAAY ETGANLFGHP
201: HSKPIWDTYL ERFVARHGGS KAERARELFA EATRRAPPHD RARLFLRHAR YEEEFGSAAR HGRLRRGGAV RAGERQGERL RGLRGAGGRA PRRAEGEAGL
301: RAGDRVRRPP SPRRPGAVPP PRRARGSAGR GRPRSRRVRA RVGLRRSRRR RGVLGEVERL RSPARRRAHL HRHAPDKAHA EAREDAWGSG EWRTER

Best Arabidopsis Sequence Match ( AT5G28740.1 )
(BLAST)

001: MAISKDLYPS QEDLLYEEEL LRNQFSLKLW WRYLIAKAES PFKKRFIIYE RALKALPGSY KLWYAYLRER LDIVRNLPVT HPQYDSLNNT FERGLVTMHK
101: MPRIWVMYLQ TLTVQQLITR TRRTFDRALC ALPVTQHDRI WEPYLVFVSQ NGIPIETSLR VYRRYLMYDP SHIEEFIEFL VKSERWQESA ERLASVLNDD
201: KFYSIKGKTK HKLWLELCEL LVHHANVISG LNVDAIIRGG IRKFTDEVGM LWTSLADYYI RKNLLEKARD IYEEGMMKVV TVRDFSVIFD VYSRFEESTV
301: AKKMEMMSSS DEEDENEENG VEDDEEDVRL NFNLSVKELQ RKILNGFWLN DDNDVDLRLA RLEELMNRRP ALANSVLLRQ NPHNVEQWHR RVKIFEGNAA
401: KQILTYTEAV RTVDPMKAVG KPHTLWVAFA KLYENHKDLV NTRVIFDKAV QVNYKTVDHL ASVWCEWAEM ELRHKNFKGA LELMRRATAV PTVEVRRRVA
501: ADGNEPVQMK LHRSLRLWSF YVDLEESLGT LESTRAVYEK ILDLRIATPQ IIMNYAFLLE ENKYFEDAFK VYERGVKIFK YPHVKDIWVT YLTKFVKRYG
601: KTKLERAREL FEHAVSMAPS DAVRTLYLQY AKLEEDYGLA KRAMKVYEEA TKKVPEGQKL EMYEIYISRA AEIFGVPRTR EIYEQAIESG LPHKDVKIMC
701: IKFAELERSL GEIDRARALY KYSSQFADPR SDPEFWNKWH EFEVQHGNED TYREMLRIKR SVSASYSQTH FILPENMMQK DKLLDVEDAK GELKRAGLPE
801: DEMAALERQL LSTTTPTEPA KDGGRRVGFV SAGVISQSGE NEGKPVTGNG EDIELPDESD DESDGDDHVE ISQKEVPAAV FGGLARKRDE DGEEAGEDGA
901: AQKLGALERI KRQKLNQ

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LKU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.