CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05604	Canola	cytosol	73.81	10.83
CDY33886	Canola	cytosol	73.81	10.78
CDX86208	Canola	cytosol	16.67	10.0
CDY54766	Canola	nucleus	7.14	9.68
GSMUA_Achr9P04370_001	Banana	cytosol	53.17	8.43
EER99801	Sorghum	cytosol, plastid	53.17	7.19
Zm00001d022335_P002	Maize	plasma membrane	52.38	7.07
Zm00001d007043_P003	Maize	plastid	51.59	7.01
Os07t0644300-02	Rice	nucleus	51.59	6.98
HORVU2Hr1G025180.1	Barley	cytosol	50.0	6.77
TraesCS2B01G167600.1	Wheat	cytosol	50.0	6.76
TraesCS2A01G142400.1	Wheat	cytosol, nucleus	50.0	6.75
TraesCS2D01G145800.1	Wheat	cytosol	49.21	6.65
Os01t0686600-01	Rice	nucleus	7.14	2.27
CDY48662	Canola	cytosol, nucleus, plastid	1.59	2.15
CDY33383	Canola	cytosol	3.17	1.44
TraesCS7A01G192600.1	Wheat	cytosol	7.94	1.31
TraesCS4B01G183500.1	Wheat	cytosol	7.94	1.3
TraesCS7B01G098000.1	Wheat	cytosol	7.94	1.25
Os06t0235800-00	Rice	nucleus	7.94	1.25
CDX73271	Canola	cytosol	2.38	1.13
TraesCS7D01G193900.1	Wheat	cytosol	6.35	1.03
EER89493	Sorghum	cytosol	6.35	1.02
HORVU7Hr1G039410.1	Barley	cytosol	6.35	1.01
HORVU5Hr1G069290.1	Barley	cytosol	5.56	0.9
CDY14354	Canola	nucleus	0.79	0.68
Solyc03g044030.1.1	Tomato	nucleus	0.0	0.0
Solyc03g044040.1.1	Tomato	cytosol	0.0	0.0
CDY68456	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY48663	EnsemblPlantsGene:GSBRNA2T00091528001	ProteinID:CDY48663	ProteinID:CDY48663.1	SEG:seg	UniParc:UPI0004EE875D
UniProt:A0A078IHR6	MapMan:35.2	:	:	:	:

Description

BnaC07g27460DBnaC07g27460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IHR6]

Coordinates

chrLK032785:+:71145..71616

Molecular Weight (calculated)

14064.5 Da

IEP (calculated)

4.302

GRAVY (calculated)

-0.802

Length

126 amino acids

Sequence
(BLAST)

001: MLRIKRSVSA SYSQTHFILP ENMMQRDKMV DVEEAKDELK KAGLPDDEMA ALERQLMAAP VSTTVESDDD DEDASDGEER VEIAQKEVPA AVFGGLARKR
101: EEEEAEEGGE KTLGALERIK RQKLAQ

Best Arabidopsis Sequence Match ( AT5G28740.1 )
(BLAST)

001: MAISKDLYPS QEDLLYEEEL LRNQFSLKLW WRYLIAKAES PFKKRFIIYE RALKALPGSY KLWYAYLRER LDIVRNLPVT HPQYDSLNNT FERGLVTMHK
101: MPRIWVMYLQ TLTVQQLITR TRRTFDRALC ALPVTQHDRI WEPYLVFVSQ NGIPIETSLR VYRRYLMYDP SHIEEFIEFL VKSERWQESA ERLASVLNDD
201: KFYSIKGKTK HKLWLELCEL LVHHANVISG LNVDAIIRGG IRKFTDEVGM LWTSLADYYI RKNLLEKARD IYEEGMMKVV TVRDFSVIFD VYSRFEESTV
301: AKKMEMMSSS DEEDENEENG VEDDEEDVRL NFNLSVKELQ RKILNGFWLN DDNDVDLRLA RLEELMNRRP ALANSVLLRQ NPHNVEQWHR RVKIFEGNAA
401: KQILTYTEAV RTVDPMKAVG KPHTLWVAFA KLYENHKDLV NTRVIFDKAV QVNYKTVDHL ASVWCEWAEM ELRHKNFKGA LELMRRATAV PTVEVRRRVA
501: ADGNEPVQMK LHRSLRLWSF YVDLEESLGT LESTRAVYEK ILDLRIATPQ IIMNYAFLLE ENKYFEDAFK VYERGVKIFK YPHVKDIWVT YLTKFVKRYG
601: KTKLERAREL FEHAVSMAPS DAVRTLYLQY AKLEEDYGLA KRAMKVYEEA TKKVPEGQKL EMYEIYISRA AEIFGVPRTR EIYEQAIESG LPHKDVKIMC
701: IKFAELERSL GEIDRARALY KYSSQFADPR SDPEFWNKWH EFEVQHGNED TYREMLRIKR SVSASYSQTH FILPENMMQK DKLLDVEDAK GELKRAGLPE
801: DEMAALERQL LSTTTPTEPA KDGGRRVGFV SAGVISQSGE NEGKPVTGNG EDIELPDESD DESDGDDHVE ISQKEVPAAV FGGLARKRDE DGEEAGEDGA
901: AQKLGALERI KRQKLNQ

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LKU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.