CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33886	Canola	cytosol	96.04	95.6
Bra020619.1-P	Field mustard	cytosol	98.95	93.1
AT5G28740.1	Thale cress	cytosol	91.39	85.61
CDY48662	Canola	cytosol, nucleus, plastid	8.5	78.49
Solyc03g044040.1.1	Tomato	cytosol	16.41	74.21
CDY48663	Canola	mitochondrion	10.83	73.81
GSMUA_Achr9P04370_001	Banana	cytosol	62.86	67.92
CDX86208	Canola	cytosol	15.6	63.81
Os07t0644300-02	Rice	nucleus	66.36	61.22
Zm00001d007043_P003	Maize	plastid	65.42	60.63
EER99801	Sorghum	cytosol, plastid	65.54	60.41
TraesCS2B01G167600.1	Wheat	cytosol	64.84	59.76
Zm00001d022335_P002	Maize	plasma membrane	64.96	59.74
TraesCS2A01G142400.1	Wheat	cytosol, nucleus	64.73	59.59
HORVU2Hr1G025180.1	Barley	cytosol	64.49	59.51
TraesCS2D01G145800.1	Wheat	cytosol	64.61	59.49
CDY54766	Canola	nucleus	5.24	48.39
CDX73271	Canola	cytosol	12.57	40.75
EER89493	Sorghum	cytosol	32.36	35.5
Os06t0235800-00	Rice	nucleus	32.83	35.21
TraesCS7A01G192600.1	Wheat	cytosol	31.08	34.95
TraesCS4B01G183500.1	Wheat	cytosol	31.32	34.84
HORVU7Hr1G039410.1	Barley	cytosol	31.78	34.3
TraesCS7D01G193900.1	Wheat	cytosol	30.85	34.19
CDY68456	Canola	cytosol	5.47	33.81
HORVU5Hr1G069290.1	Barley	cytosol	30.03	32.99
TraesCS7B01G098000.1	Wheat	cytosol	30.15	32.33
Os01t0686600-01	Rice	nucleus	13.74	29.8
Solyc03g044030.1.1	Tomato	nucleus	11.41	27.15
CDY14354	Canola	nucleus	4.54	26.71
CDY33383	Canola	cytosol	4.77	14.75

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.4.5.2.5	GO:A0A078EYG7	EnsemblPlants:CDY05604	ProteinID:CDY05604	ProteinID:CDY05604.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00120567001	InterPro:HAT	InterPro:IPR011990
InterPro:IPR013026	PFscan:PS50293	PANTHER:PTHR11246	PANTHER:PTHR11246:SF5	SMART:SM00386	SUPFAM:SSF48452
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EDC74A	SEG:seg	:	:

Description

BnaC02g39330D

Coordinates

chrLK031963:+:120259..123844

Molecular Weight (calculated)

99933.5 Da

IEP (calculated)

5.745

GRAVY (calculated)

-0.496

Length

859 amino acids

Sequence
(BLAST)

001: MAISQDLYPS QEDLVYEEEI LRNPFSLKLW WRYLISKSDS PFKKRFVIYE RALKALPGSY KLWHAYLRER LEIVRNLPVT HPHYDSLNNT FERGLVTMHK
101: MPRIWVMYLQ TLTAQRLVTR TRRTFDRALC ALPVTQHERI WEPYLVFVGQ EGVPIETSLR VYRRYLMYDP SHIEEFIEFL LKSARWQEAA ERLAFVLNDD
201: QFYSIKGKTK HKLWMELCEL LVRHANEISG LNVDAIIRGG IRKFTDEVGM LWTSLADYYI RKNLLEKARD VYEEGMMKVV TVRDFSVIFD VYSRFEESTV
301: AKKMEMMSSS DEEEDEAEEE NEEEDVRLNF SLVKIFEGDA AKQILTYTEA VRTVDPMKAL GKPHTLWVAF AKLYEDHKDL VNTRVILDKA VQVNYKTVDH
401: LASVWCEWAE MELRHKNFKG ALELMRRATA VPTVEVKRRV AADGNEPVQM KLHRSLRLWS FYVDLEESLG TLESTRAVYE KILDLRIATP QIILNYAYLL
501: EENKYFEDAF KVYERGVKIF KYPHVKDIWV TYLTKFVKRY GKAKLERARE LFEHAVSMAP SDAVRTLYLQ YAKLEEDYGL AKRAMKVYEE ATKKVPEGQR
601: LEMYEIYISR AAEIFGVPRT REIYEQAIES GLPHKDVKIM CIKFAELERS LGEIDRSRAV YKYASQYADP RSDPEFWNKW HEFEVLHGNE DTYREMLRIK
701: RSVSASYSQT HFILPENMMQ KDKIDVEEAK DELKKAGLPE DEMAALERQL MAAPMSTTVT SKDGGRRVGF VSAGVISQSG ENAGKPVTGN GEDIELPDES
801: DEDESDGDDN VEIAQKEVPA AVFGGLARKR EEDGKEAEED GAGKTLGALE RIKRQKLGQ

Best Arabidopsis Sequence Match ( AT5G28740.1 )
(BLAST)

001: MAISKDLYPS QEDLLYEEEL LRNQFSLKLW WRYLIAKAES PFKKRFIIYE RALKALPGSY KLWYAYLRER LDIVRNLPVT HPQYDSLNNT FERGLVTMHK
101: MPRIWVMYLQ TLTVQQLITR TRRTFDRALC ALPVTQHDRI WEPYLVFVSQ NGIPIETSLR VYRRYLMYDP SHIEEFIEFL VKSERWQESA ERLASVLNDD
201: KFYSIKGKTK HKLWLELCEL LVHHANVISG LNVDAIIRGG IRKFTDEVGM LWTSLADYYI RKNLLEKARD IYEEGMMKVV TVRDFSVIFD VYSRFEESTV
301: AKKMEMMSSS DEEDENEENG VEDDEEDVRL NFNLSVKELQ RKILNGFWLN DDNDVDLRLA RLEELMNRRP ALANSVLLRQ NPHNVEQWHR RVKIFEGNAA
401: KQILTYTEAV RTVDPMKAVG KPHTLWVAFA KLYENHKDLV NTRVIFDKAV QVNYKTVDHL ASVWCEWAEM ELRHKNFKGA LELMRRATAV PTVEVRRRVA
501: ADGNEPVQMK LHRSLRLWSF YVDLEESLGT LESTRAVYEK ILDLRIATPQ IIMNYAFLLE ENKYFEDAFK VYERGVKIFK YPHVKDIWVT YLTKFVKRYG
601: KTKLERAREL FEHAVSMAPS DAVRTLYLQY AKLEEDYGLA KRAMKVYEEA TKKVPEGQKL EMYEIYISRA AEIFGVPRTR EIYEQAIESG LPHKDVKIMC
701: IKFAELERSL GEIDRARALY KYSSQFADPR SDPEFWNKWH EFEVQHGNED TYREMLRIKR SVSASYSQTH FILPENMMQK DKLLDVEDAK GELKRAGLPE
801: DEMAALERQL LSTTTPTEPA KDGGRRVGFV SAGVISQSGE NEGKPVTGNG EDIELPDESD DESDGDDHVE ISQKEVPAAV FGGLARKRDE DGEEAGEDGA
901: AQKLGALERI KRQKLNQ

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LKU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.