Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27341663
|
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER99801 | Sorghum | cytosol, plastid | 96.79 | 97.0 |
| Zm00001d007043_P003 | Maize | plastid | 94.86 | 95.58 |
| Os07t0644300-02 | Rice | nucleus | 89.72 | 90.01 |
| TraesCS2B01G167600.1 | Wheat | cytosol | 86.19 | 86.37 |
| TraesCS2A01G142400.1 | Wheat | cytosol, nucleus | 86.19 | 86.28 |
| TraesCS2D01G145800.1 | Wheat | cytosol | 86.08 | 86.17 |
| HORVU2Hr1G025180.1 | Barley | cytosol | 85.76 | 86.04 |
| GSMUA_Achr9P04370_001 | Banana | cytosol | 60.92 | 71.57 |
| KRH10763 | Soybean | cytosol | 66.49 | 67.65 |
| PGSC0003DMT400017726 | Potato | cytosol | 65.95 | 67.32 |
| KRH21565 | Soybean | nucleus | 66.06 | 67.14 |
| Solyc01g086990.2.1 | Tomato | cytosol, nucleus | 65.63 | 66.92 |
| CDY33886 | Canola | cytosol | 60.6 | 65.59 |
| CDY05604 | Canola | cytosol | 59.74 | 64.96 |
| Bra020619.1-P | Field mustard | cytosol | 63.28 | 64.73 |
| AT5G28740.1 | Thale cress | cytosol | 63.49 | 64.67 |
| Solyc03g044040.1.1 | Tomato | cytosol | 12.96 | 63.68 |
| CDY48662 | Canola | cytosol, nucleus, plastid | 5.89 | 59.14 |
| VIT_00s0404g00060.t01 | Wine grape | cytosol | 57.92 | 57.07 |
| CDY48663 | Canola | mitochondrion | 7.07 | 52.38 |
| CDX86208 | Canola | cytosol | 11.35 | 50.48 |
| Bra010008.1-P | Field mustard | cytosol, nucleus, plastid | 13.06 | 47.1 |
| CDY54766 | Canola | nucleus | 4.28 | 43.01 |
| Bra027126.1-P | Field mustard | endoplasmic reticulum, golgi | 6.85 | 41.56 |
| Bra032990.1-P | Field mustard | cytosol, nucleus, plastid | 13.06 | 38.49 |
| CDY68456 | Canola | cytosol | 4.93 | 33.09 |
| CDX73271 | Canola | cytosol | 9.21 | 32.45 |
| Solyc03g044030.1.1 | Tomato | nucleus | 11.78 | 30.47 |
| Bra003036.1-P | Field mustard | nucleus | 3.96 | 22.16 |
| CDY14354 | Canola | nucleus | 2.89 | 18.49 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:16.4.5.2.5 | UniProt:A0A1D6IL59 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:HAT |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:IPR013026 | ProteinID:ONM60137.1 | ProteinID:ONM60141.1 | PFAM:PF01535 |
| PFscan:PS50293 | PANTHER:PTHR11246 | PANTHER:PTHR11246:SF5 | InterPro:Pentatricopeptide_repeat | SMART:SM00386 | SUPFAM:SSF48452 |
| InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | UniParc:UPI000844F283 | EnsemblPlantsGene:Zm00001d022335 | EnsemblPlants:Zm00001d022335_P002 | EnsemblPlants:Zm00001d022335_T002 |
| SEG:seg | : | : | : | : | : |
Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Coordinates
chr7:-:175629774..175635353
Molecular Weight (calculated)
107173.0 Da
IEP (calculated)
6.305
GRAVY (calculated)
-0.506
Length
934 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSASGPVAV ASAPAPVKSA PSLAVGISPD LYPTEDDLPY EEEILREPFK LKGWWRYLVA RATAPFAKRA VIYERALKAL PGSYKLWHAY LRDRLDHARP
101: HPIDHPAYSS LNNTFERALA TMHKMPRVWV LYLTSLLDQR LLTRARRAFD RALRALPVTQ HDRIWPLYLR LASLPACPVE TSLRVFRRYL QFDPSHAEDF
201: INFLISANHW QEAANRLASV LNDDGFRSVK GKTRHQLWLE LCEILTKHAD EVAGLKVDAI LRGGIRKFTD EVGKLWTSLA DYYVRRGLFE KARDVFEEGV
301: SSVVTVKEFS VVFEAYTQFE QSMLAAKLEA AEEEGAEDEN EGGGRKSGMD KLSKKFLNEF WLNDEDDTDL RMARFERLLD RRPELLSSVL LRQNPHNVEE
401: WHRRVKLFEK DPARQVATYV EAVKTVDPMK AVGKPHTLWV AFAKMYEKHS RLDSAEDIFK RATQVNYKAV DHLASIWCEW AEMELRHNNF DKAIELMRQA
501: TSEPSVENIH ANNMIDAAAA EGDEPVQMKV HKSLKLWSFY VDLEESLGTL DSTRAVYERI LDLRIATPQI ILNYAYLLEE HKYFEDAFKV YERGVKIFKY
601: PHVKAIWVTY LTKFVHRYKR SKLERARELF HEAVQQAPAE EKKPLYLQWA KLEEDYGLAK RAMNVYDEAV RAVPNSEKMA MYEIYIARAA ELFGVPRTRQ
701: IYEQAIESGL PDRDVLTMCM KFAELERSLG EIDRSRAIYV HASNYADPNN PDFWKKWNDF EIQHGNEDTF REMLRIKRTV AASRSQTHFI LPEYLMQRDQ
801: KLNLDEAVDT LKRAGVPEDE MAALERQLAT GPSTAPPAAP STAPASANRM MNFVSAGVEA QVESSRQQAA NNEDIELPDE SDDEEPDVQI AEKSVPAAVF
901: GELGKRAAEN NEESSGAQGN EQLGALERIK RRRQ
101: HPIDHPAYSS LNNTFERALA TMHKMPRVWV LYLTSLLDQR LLTRARRAFD RALRALPVTQ HDRIWPLYLR LASLPACPVE TSLRVFRRYL QFDPSHAEDF
201: INFLISANHW QEAANRLASV LNDDGFRSVK GKTRHQLWLE LCEILTKHAD EVAGLKVDAI LRGGIRKFTD EVGKLWTSLA DYYVRRGLFE KARDVFEEGV
301: SSVVTVKEFS VVFEAYTQFE QSMLAAKLEA AEEEGAEDEN EGGGRKSGMD KLSKKFLNEF WLNDEDDTDL RMARFERLLD RRPELLSSVL LRQNPHNVEE
401: WHRRVKLFEK DPARQVATYV EAVKTVDPMK AVGKPHTLWV AFAKMYEKHS RLDSAEDIFK RATQVNYKAV DHLASIWCEW AEMELRHNNF DKAIELMRQA
501: TSEPSVENIH ANNMIDAAAA EGDEPVQMKV HKSLKLWSFY VDLEESLGTL DSTRAVYERI LDLRIATPQI ILNYAYLLEE HKYFEDAFKV YERGVKIFKY
601: PHVKAIWVTY LTKFVHRYKR SKLERARELF HEAVQQAPAE EKKPLYLQWA KLEEDYGLAK RAMNVYDEAV RAVPNSEKMA MYEIYIARAA ELFGVPRTRQ
701: IYEQAIESGL PDRDVLTMCM KFAELERSLG EIDRSRAIYV HASNYADPNN PDFWKKWNDF EIQHGNEDTF REMLRIKRTV AASRSQTHFI LPEYLMQRDQ
801: KLNLDEAVDT LKRAGVPEDE MAALERQLAT GPSTAPPAAP STAPASANRM MNFVSAGVEA QVESSRQQAA NNEDIELPDE SDDEEPDVQI AEKSVPAAVF
901: GELGKRAAEN NEESSGAQGN EQLGALERIK RRRQ
001: MAISKDLYPS QEDLLYEEEL LRNQFSLKLW WRYLIAKAES PFKKRFIIYE RALKALPGSY KLWYAYLRER LDIVRNLPVT HPQYDSLNNT FERGLVTMHK
101: MPRIWVMYLQ TLTVQQLITR TRRTFDRALC ALPVTQHDRI WEPYLVFVSQ NGIPIETSLR VYRRYLMYDP SHIEEFIEFL VKSERWQESA ERLASVLNDD
201: KFYSIKGKTK HKLWLELCEL LVHHANVISG LNVDAIIRGG IRKFTDEVGM LWTSLADYYI RKNLLEKARD IYEEGMMKVV TVRDFSVIFD VYSRFEESTV
301: AKKMEMMSSS DEEDENEENG VEDDEEDVRL NFNLSVKELQ RKILNGFWLN DDNDVDLRLA RLEELMNRRP ALANSVLLRQ NPHNVEQWHR RVKIFEGNAA
401: KQILTYTEAV RTVDPMKAVG KPHTLWVAFA KLYENHKDLV NTRVIFDKAV QVNYKTVDHL ASVWCEWAEM ELRHKNFKGA LELMRRATAV PTVEVRRRVA
501: ADGNEPVQMK LHRSLRLWSF YVDLEESLGT LESTRAVYEK ILDLRIATPQ IIMNYAFLLE ENKYFEDAFK VYERGVKIFK YPHVKDIWVT YLTKFVKRYG
601: KTKLERAREL FEHAVSMAPS DAVRTLYLQY AKLEEDYGLA KRAMKVYEEA TKKVPEGQKL EMYEIYISRA AEIFGVPRTR EIYEQAIESG LPHKDVKIMC
701: IKFAELERSL GEIDRARALY KYSSQFADPR SDPEFWNKWH EFEVQHGNED TYREMLRIKR SVSASYSQTH FILPENMMQK DKLLDVEDAK GELKRAGLPE
801: DEMAALERQL LSTTTPTEPA KDGGRRVGFV SAGVISQSGE NEGKPVTGNG EDIELPDESD DESDGDDHVE ISQKEVPAAV FGGLARKRDE DGEEAGEDGA
901: AQKLGALERI KRQKLNQ
101: MPRIWVMYLQ TLTVQQLITR TRRTFDRALC ALPVTQHDRI WEPYLVFVSQ NGIPIETSLR VYRRYLMYDP SHIEEFIEFL VKSERWQESA ERLASVLNDD
201: KFYSIKGKTK HKLWLELCEL LVHHANVISG LNVDAIIRGG IRKFTDEVGM LWTSLADYYI RKNLLEKARD IYEEGMMKVV TVRDFSVIFD VYSRFEESTV
301: AKKMEMMSSS DEEDENEENG VEDDEEDVRL NFNLSVKELQ RKILNGFWLN DDNDVDLRLA RLEELMNRRP ALANSVLLRQ NPHNVEQWHR RVKIFEGNAA
401: KQILTYTEAV RTVDPMKAVG KPHTLWVAFA KLYENHKDLV NTRVIFDKAV QVNYKTVDHL ASVWCEWAEM ELRHKNFKGA LELMRRATAV PTVEVRRRVA
501: ADGNEPVQMK LHRSLRLWSF YVDLEESLGT LESTRAVYEK ILDLRIATPQ IIMNYAFLLE ENKYFEDAFK VYERGVKIFK YPHVKDIWVT YLTKFVKRYG
601: KTKLERAREL FEHAVSMAPS DAVRTLYLQY AKLEEDYGLA KRAMKVYEEA TKKVPEGQKL EMYEIYISRA AEIFGVPRTR EIYEQAIESG LPHKDVKIMC
701: IKFAELERSL GEIDRARALY KYSSQFADPR SDPEFWNKWH EFEVQHGNED TYREMLRIKR SVSASYSQTH FILPENMMQK DKLLDVEDAK GELKRAGLPE
801: DEMAALERQL LSTTTPTEPA KDGGRRVGFV SAGVISQSGE NEGKPVTGNG EDIELPDESD DESDGDDHVE ISQKEVPAAV FGGLARKRDE DGEEAGEDGA
901: AQKLGALERI KRQKLNQ
Arabidopsis Description
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LKU3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.