CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10763	Soybean	cytosol	97.39	97.49
Solyc01g086990.2.1	Tomato	cytosol, nucleus	81.83	82.1
PGSC0003DMT400017726	Potato	cytosol	81.72	82.08
AT5G28740.1	Thale cress	cytosol	78.67	78.84
GSMUA_Achr9P04370_001	Banana	cytosol	65.18	75.35
VIT_00s0404g00060.t01	Wine grape	cytosol	74.54	72.26
Os07t0644300-02	Rice	nucleus	67.79	66.92
Zm00001d007043_P003	Maize	plastid	67.36	66.77
EER99801	Sorghum	cytosol, plastid	67.25	66.31
Zm00001d022335_P002	Maize	plasma membrane	67.14	66.06
TraesCS2D01G145800.1	Wheat	cytosol	66.92	65.92
TraesCS2A01G142400.1	Wheat	cytosol, nucleus	66.81	65.81
TraesCS2B01G167600.1	Wheat	cytosol	66.7	65.77
HORVU2Hr1G025180.1	Barley	cytosol	66.27	65.41
CDX86208	Canola	cytosol	12.4	54.29
Bra010008.1-P	Field mustard	cytosol, nucleus, plastid	14.91	52.9
Bra032990.1-P	Field mustard	cytosol, nucleus, plastid	15.23	44.16
EER89493	Sorghum	cytosol	34.06	39.97
Os06t0235800-00	Rice	nucleus	34.39	39.45
TraesCS4B01G183500.1	Wheat	cytosol	32.75	38.99
HORVU7Hr1G039410.1	Barley	cytosol	33.41	38.57
TraesCS7A01G192600.1	Wheat	cytosol	31.88	38.35
TraesCS7D01G193900.1	Wheat	cytosol	32.1	38.06
HORVU5Hr1G069290.1	Barley	cytosol	31.99	37.6
TraesCS7B01G098000.1	Wheat	cytosol	31.01	35.58
Os01t0686600-01	Rice	nucleus	13.17	30.56

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100781026	MapMan:16.4.5.2.5	EMBL:ACUP02008360	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G245700
GO:GO:0000349	GO:GO:0000974	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006396	GO:GO:0006397
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0071010	GO:GO:0071012
GO:GO:0071013	GO:GO:0071014	InterPro:HAT	InterPro:IPR011990	InterPro:IPR013026	UniProt:K7M1P8
EnsemblPlants:KRH21565	ProteinID:KRH21565	ProteinID:KRH21565.1	ProteinID:KRH21566.1	PFAM:PF05843	PFscan:PS50293
PANTHER:PTHR11246	PANTHER:PTHR11246:SF5	SMART:SM00386	SUPFAM:SSF48452	InterPro:Suf	InterPro:TPR-contain_dom
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233B0D4	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:35464732..35471240

Molecular Weight (calculated)

107709.0 Da

IEP (calculated)

5.667

GRAVY (calculated)

-0.564

Length

919 amino acids

Sequence
(BLAST)

001: MVIAQDLYPS EDDLLYEEEL LRNPFSLKLW WRYLIARSEA PFKKRFVIYE RALKALPGSY KLWHAYLRER LDLVRNLPVI HSQYDTLNNT FERALVTMHK
101: MPRIWIMYLQ TLTNQKLITR TRRTFDRALC ALPVTQHDRI WEPYLVFVSQ KGIPIETSLR VYRRYLKYDP SHIEDFIEFL LNSSLWQESS ERLASVLNDD
201: QFYSIKGKTK HRLWLELCDL LTRHANEVSG LNVDAIIRGG IRKFTDEVGR LWTSLAEYYI RRGLHEKARD VFEEGMSTVI TVRDFSVIFD SYSQFEESML
301: AFKMEEMRLS DEEDGEEEGE ENGVEEGDEE DIRFKGRLVE EDFERKILHG FWLNDKNDID LRLARFDYLM ERRPELANSV LLRQNPHNVE QWHRRVKLFE
401: GNPTKQILTY TEAVRTIDPM KAVGKPHTLW VAFAKLYEQH KDIANARVIF DKAVQVNYKT VDNLASVWCE WAEMELKYKN FKGALELMRR ATAEPSVEVK
501: RRVAADGNEP VQMKLHKSLR LWTFYVDLEE SLGTLESTCA VYERILDLRI ATPQIIINYA YFLEEHKYFE DAFKVYERGV KIFKYPHVKD IWVTYLSKFV
601: KRYGKNKLER ARELFENAVE SAPADQVKPL YLQYAKLEED YGLAKRAMKV YDQATKAVPN NEKLSMYEIY IARAAEIFGV PKTREIYEQA IESGLPDKDV
701: KTMCLKYAEL EKSLGEIDRA RGIFVFASQF ADPRSDPEFW NKWHEFEVQH GNEDTFREML RIKRSVSASY SQTHFILPEY LMQKDQTVNL DEAKDKLKQA
801: GIPEDEMAAL ERQLAPAVDN TVTKDRKVGF VSAGVESQLD RGVKTSANHE DIELPEESDS DDDDDKIEIA QKDVPSAVFG GLIRKRDENE NNGEVDAAKD
901: KDNGIRLGAL ERMKRLKQN

Best Arabidopsis Sequence Match ( AT5G28740.1 )
(BLAST)

001: MAISKDLYPS QEDLLYEEEL LRNQFSLKLW WRYLIAKAES PFKKRFIIYE RALKALPGSY KLWYAYLRER LDIVRNLPVT HPQYDSLNNT FERGLVTMHK
101: MPRIWVMYLQ TLTVQQLITR TRRTFDRALC ALPVTQHDRI WEPYLVFVSQ NGIPIETSLR VYRRYLMYDP SHIEEFIEFL VKSERWQESA ERLASVLNDD
201: KFYSIKGKTK HKLWLELCEL LVHHANVISG LNVDAIIRGG IRKFTDEVGM LWTSLADYYI RKNLLEKARD IYEEGMMKVV TVRDFSVIFD VYSRFEESTV
301: AKKMEMMSSS DEEDENEENG VEDDEEDVRL NFNLSVKELQ RKILNGFWLN DDNDVDLRLA RLEELMNRRP ALANSVLLRQ NPHNVEQWHR RVKIFEGNAA
401: KQILTYTEAV RTVDPMKAVG KPHTLWVAFA KLYENHKDLV NTRVIFDKAV QVNYKTVDHL ASVWCEWAEM ELRHKNFKGA LELMRRATAV PTVEVRRRVA
501: ADGNEPVQMK LHRSLRLWSF YVDLEESLGT LESTRAVYEK ILDLRIATPQ IIMNYAFLLE ENKYFEDAFK VYERGVKIFK YPHVKDIWVT YLTKFVKRYG
601: KTKLERAREL FEHAVSMAPS DAVRTLYLQY AKLEEDYGLA KRAMKVYEEA TKKVPEGQKL EMYEIYISRA AEIFGVPRTR EIYEQAIESG LPHKDVKIMC
701: IKFAELERSL GEIDRARALY KYSSQFADPR SDPEFWNKWH EFEVQHGNED TYREMLRIKR SVSASYSQTH FILPENMMQK DKLLDVEDAK GELKRAGLPE
801: DEMAALERQL LSTTTPTEPA KDGGRRVGFV SAGVISQSGE NEGKPVTGNG EDIELPDESD DESDGDDHVE ISQKEVPAAV FGGLARKRDE DGEEAGEDGA
901: AQKLGALERI KRQKLNQ

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LKU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.