CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0235800-00	Rice	nucleus	68.33	66.79
TraesCS7A01G192600.1	Wheat	cytosol	64.88	66.49
TraesCS7D01G193900.1	Wheat	cytosol	65.39	66.06
TraesCS4B01G183500.1	Wheat	cytosol	65.01	65.93
HORVU7Hr1G039410.1	Barley	cytosol	66.28	65.2
HORVU5Hr1G069290.1	Barley	cytosol	63.98	64.07
TraesCS7B01G098000.1	Wheat	cytosol	64.11	62.67
CDY48662	Canola	cytosol, nucleus, plastid	5.49	46.24
Solyc03g044040.1.1	Tomato	cytosol	9.96	41.05
EER99801	Sorghum	cytosol, plastid	43.81	36.8
GSMUA_Achr9P04370_001	Banana	cytosol	35.12	34.59
KRH10763	Soybean	cytosol	40.23	34.31
KRH21565	Soybean	nucleus	39.97	34.06
Bra020619.1-P	Field mustard	cytosol	39.21	33.63
CDY33886	Canola	cytosol	36.91	33.49
AT5G28740.1	Thale cress	cytosol	39.08	33.37
PGSC0003DMT400017726	Potato	cytosol	38.44	32.9
Solyc01g086990.2.1	Tomato	cytosol, nucleus	38.44	32.86
CDY05604	Canola	cytosol	35.5	32.36
VIT_00s0404g00060.t01	Wine grape	cytosol	33.21	27.43
Solyc03g044030.1.1	Tomato	nucleus	12.01	26.04
CDX73271	Canola	cytosol	8.81	26.04
CDY68456	Canola	cytosol	4.6	25.9
Bra003036.1-P	Field mustard	nucleus	4.34	20.36
CDY14354	Canola	nucleus	3.7	19.86
CDX86208	Canola	cytosol	4.85	18.1
Bra010008.1-P	Field mustard	cytosol, nucleus, plastid	5.49	16.6
Bra032990.1-P	Field mustard	cytosol, nucleus, plastid	5.49	13.56
Bra027126.1-P	Field mustard	endoplasmic reticulum, golgi	2.3	11.69
CDY54766	Canola	nucleus	1.02	8.6
CDY48663	Canola	mitochondrion	1.02	6.35

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.4.5.2.5	UniProt:C5Z7G6	EnsemblPlants:EER89493	ProteinID:EER89493	ProteinID:EER89493.1
GO:GO:0000349	GO:GO:0000974	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0071010	GO:GO:0071012	GO:GO:0071013
GO:GO:0071014	InterPro:HAT	InterPro:IPR011990	PANTHER:PTHR11246	PANTHER:PTHR11246:SF15	SMART:SM00386
EnsemblPlantsGene:SORBI_3010G097100	SUPFAM:SSF48452	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A8990D	RefSeq:XP_002438126.1	SEG:seg

Description

hypothetical protein

Coordinates

chr10:-:8741091..8743442

Molecular Weight (calculated)

88303.9 Da

IEP (calculated)

8.214

GRAVY (calculated)

-0.274

Length

783 amino acids

Sequence
(BLAST)

001: MACVISAEDV PYEHDVLREP FKVSSWLRYL SARAEAPLAK RVAIYERALR ALPGSYKLWH AYLTELAVDA ARPVAATGRA AHDAALNAAF ERALAAGMSR
101: MPRIWQMYAS ALLDQRLLTR ARRALDRALR ALPVTQHHRV WPLVLRLAYL PGCPAVTAVR LLRRYLQFDP AYAEEFIAYL VSAGRFREAA EQLASAISDD
201: GFRSAKGTTK RQLLLDLCDL VAKHPDDVAG LPVEAILRSA VRKFPEEYGV LWTTLAGHYA RKGVQNKARD VLEEATAAAT TVKDFRLVFE SYLHFEHAMA
301: AAELELDKGG QEESSASVLQ GCWLADKDDA DLNLAKLERL LERRPELLNC VQLRQNPHDV QVWHDRVKIF HTDPARQAAA YAEALSAIDP MKATGKPHTL
401: WLAFAKMYEG RGLLDSAREV FRRATQVNFK AVDDLAAVWC EWAEMELRHG NPETATDLVR QATSEPSAEV RRRVAAAPAE RGEPAQIKLH RSLKLWCLYA
501: DLMETHGTPE SACAVYERIH DLGLTTPLLV LNHASLLREH ERFEDAFRVY QRGVRSFKHP HAEPIWAAYL TQFVQRYGKS RPERVRDLFE DAVRQAPPQL
601: KKAMFLRYAK FEEDFGLATR AMKVYEDAAS AVPSRDKLGV YDVYVGRAAA MFGVVKAREI YHQAICEGGL PDEDARAICV RFADLEMGLG EVQRARALYV
701: YASGFTDPST HPDFWKRWNA FEVLHGDEST FREMLRLKRT VTMNAHAIVE AKAEIATMKR PCAGQQVEDS GMMPPESKRM RIA

Best Arabidopsis Sequence Match ( AT5G28740.1 )
(BLAST)

001: MAISKDLYPS QEDLLYEEEL LRNQFSLKLW WRYLIAKAES PFKKRFIIYE RALKALPGSY KLWYAYLRER LDIVRNLPVT HPQYDSLNNT FERGLVTMHK
101: MPRIWVMYLQ TLTVQQLITR TRRTFDRALC ALPVTQHDRI WEPYLVFVSQ NGIPIETSLR VYRRYLMYDP SHIEEFIEFL VKSERWQESA ERLASVLNDD
201: KFYSIKGKTK HKLWLELCEL LVHHANVISG LNVDAIIRGG IRKFTDEVGM LWTSLADYYI RKNLLEKARD IYEEGMMKVV TVRDFSVIFD VYSRFEESTV
301: AKKMEMMSSS DEEDENEENG VEDDEEDVRL NFNLSVKELQ RKILNGFWLN DDNDVDLRLA RLEELMNRRP ALANSVLLRQ NPHNVEQWHR RVKIFEGNAA
401: KQILTYTEAV RTVDPMKAVG KPHTLWVAFA KLYENHKDLV NTRVIFDKAV QVNYKTVDHL ASVWCEWAEM ELRHKNFKGA LELMRRATAV PTVEVRRRVA
501: ADGNEPVQMK LHRSLRLWSF YVDLEESLGT LESTRAVYEK ILDLRIATPQ IIMNYAFLLE ENKYFEDAFK VYERGVKIFK YPHVKDIWVT YLTKFVKRYG
601: KTKLERAREL FEHAVSMAPS DAVRTLYLQY AKLEEDYGLA KRAMKVYEEA TKKVPEGQKL EMYEIYISRA AEIFGVPRTR EIYEQAIESG LPHKDVKIMC
701: IKFAELERSL GEIDRARALY KYSSQFADPR SDPEFWNKWH EFEVQHGNED TYREMLRIKR SVSASYSQTH FILPENMMQK DKLLDVEDAK GELKRAGLPE
801: DEMAALERQL LSTTTPTEPA KDGGRRVGFV SAGVISQSGE NEGKPVTGNG EDIELPDESD DESDGDDHVE ISQKEVPAAV FGGLARKRDE DGEEAGEDGA
901: AQKLGALERI KRQKLNQ

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LKU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.