CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010008.1-P	Field mustard	cytosol, nucleus, plastid	70.48	57.14
Bra032990.1-P	Field mustard	cytosol, nucleus, plastid	70.48	46.69
CDY54766	Canola	nucleus	13.81	31.18
CDY48663	Canola	mitochondrion	10.0	16.67
CDY05604	Canola	cytosol	63.81	15.6
CDY33886	Canola	cytosol	63.81	15.53
GSMUA_Achr9P04370_001	Banana	cytosol	51.9	13.71
Solyc01g086990.2.1	Tomato	cytosol, nucleus	57.14	13.1
PGSC0003DMT400017726	Potato	cytosol	56.67	13.01
KRH21565	Soybean	nucleus	54.29	12.4
KRH10763	Soybean	cytosol	53.81	12.31
Os07t0644300-02	Rice	nucleus	52.38	11.82
TraesCS2B01G167600.1	Wheat	cytosol	51.43	11.59
TraesCS2D01G145800.1	Wheat	cytosol	51.43	11.58
TraesCS2A01G142400.1	Wheat	cytosol, nucleus	51.43	11.58
Zm00001d007043_P003	Maize	plastid	50.95	11.54
HORVU2Hr1G025180.1	Barley	cytosol	50.48	11.39
EER99801	Sorghum	cytosol, plastid	50.48	11.37
Zm00001d022335_P002	Maize	plasma membrane	50.48	11.35
VIT_00s0404g00060.t01	Wine grape	cytosol	49.52	10.97
CDY48662	Canola	cytosol, nucleus, plastid	4.29	9.68
CDY68456	Canola	cytosol	4.76	7.19
CDX73271	Canola	cytosol	8.57	6.79
Os01t0686600-01	Rice	nucleus	10.0	5.3
Os06t0235800-00	Rice	nucleus	19.05	4.99
TraesCS4B01G183500.1	Wheat	cytosol	18.1	4.92
TraesCS7D01G193900.1	Wheat	cytosol	18.1	4.9
EER89493	Sorghum	cytosol	18.1	4.85
TraesCS7A01G192600.1	Wheat	cytosol	16.67	4.58
TraesCS7B01G098000.1	Wheat	cytosol	17.14	4.49
HORVU5Hr1G069290.1	Barley	cytosol	16.67	4.48
HORVU7Hr1G039410.1	Barley	cytosol	16.67	4.4
CDY14354	Canola	nucleus	2.38	3.42
CDY33383	Canola	cytosol	0.95	0.72

Protein Annotations

EnsemblPlants:CDX86208	EnsemblPlantsGene:GSBRNA2T00144295001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR11246	PANTHER:PTHR11246:SF5	ProteinID:CDX86208	ProteinID:CDX86208.1
SUPFAM:SSF48452	UniParc:UPI0004EEA06B	MapMan:35.2	:	:	:

Description

BnaA06g29250D

Coordinates

chrLK031845:+:368033..369045

Molecular Weight (calculated)

24502.4 Da

IEP (calculated)

7.021

GRAVY (calculated)

-0.575

Length

210 amino acids

Sequence
(BLAST)

001: MVQVSYKTVD HLATLWCEWA EMELRHKNFK GALELMRRAT AVPTVEMRRR VAADGNELSC VCMPRLRSYS TTLSFSRRIS SLKMRSREIY EQAIESGLPH
101: KDVELMCIKF AELERSLGEF DRSRAVYKCA SQYADPRSDP EFWNKWHEFE THFVLPENMM QRDKMVDVEE AKDELKKAGL LDDEMAAPVS TASDDESVWK
201: IKIKRQKLAQ

Best Arabidopsis Sequence Match ( AT5G28740.1 )
(BLAST)

001: MAISKDLYPS QEDLLYEEEL LRNQFSLKLW WRYLIAKAES PFKKRFIIYE RALKALPGSY KLWYAYLRER LDIVRNLPVT HPQYDSLNNT FERGLVTMHK
101: MPRIWVMYLQ TLTVQQLITR TRRTFDRALC ALPVTQHDRI WEPYLVFVSQ NGIPIETSLR VYRRYLMYDP SHIEEFIEFL VKSERWQESA ERLASVLNDD
201: KFYSIKGKTK HKLWLELCEL LVHHANVISG LNVDAIIRGG IRKFTDEVGM LWTSLADYYI RKNLLEKARD IYEEGMMKVV TVRDFSVIFD VYSRFEESTV
301: AKKMEMMSSS DEEDENEENG VEDDEEDVRL NFNLSVKELQ RKILNGFWLN DDNDVDLRLA RLEELMNRRP ALANSVLLRQ NPHNVEQWHR RVKIFEGNAA
401: KQILTYTEAV RTVDPMKAVG KPHTLWVAFA KLYENHKDLV NTRVIFDKAV QVNYKTVDHL ASVWCEWAEM ELRHKNFKGA LELMRRATAV PTVEVRRRVA
501: ADGNEPVQMK LHRSLRLWSF YVDLEESLGT LESTRAVYEK ILDLRIATPQ IIMNYAFLLE ENKYFEDAFK VYERGVKIFK YPHVKDIWVT YLTKFVKRYG
601: KTKLERAREL FEHAVSMAPS DAVRTLYLQY AKLEEDYGLA KRAMKVYEEA TKKVPEGQKL EMYEIYISRA AEIFGVPRTR EIYEQAIESG LPHKDVKIMC
701: IKFAELERSL GEIDRARALY KYSSQFADPR SDPEFWNKWH EFEVQHGNED TYREMLRIKR SVSASYSQTH FILPENMMQK DKLLDVEDAK GELKRAGLPE
801: DEMAALERQL LSTTTPTEPA KDGGRRVGFV SAGVISQSGE NEGKPVTGNG EDIELPDESD DESDGDDHVE ISQKEVPAAV FGGLARKRDE DGEEAGEDGA
901: AQKLGALERI KRQKLNQ

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LKU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.