CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g044040.1.1	Tomato	cytosol	58.06	28.42
CDY14354	Canola	nucleus	27.96	17.81
CDX73271	Canola	cytosol	38.71	13.58
CDY68456	Canola	cytosol	12.9	8.63
Os01t0686600-01	Rice	nucleus	36.56	8.59
CDY05604	Canola	cytosol	78.49	8.5
CDY33886	Canola	cytosol	77.42	8.34
GSMUA_Achr9P04370_001	Banana	cytosol	65.59	7.67
Os07t0644300-02	Rice	nucleus	62.37	6.23
TraesCS2B01G167600.1	Wheat	cytosol	62.37	6.22
TraesCS2A01G142400.1	Wheat	cytosol, nucleus	62.37	6.22
TraesCS2D01G145800.1	Wheat	cytosol	62.37	6.22
HORVU2Hr1G025180.1	Barley	cytosol	61.29	6.12
EER99801	Sorghum	cytosol, plastid	59.14	5.9
Zm00001d022335_P002	Maize	plasma membrane	59.14	5.89
Zm00001d007043_P003	Maize	plastid	58.06	5.83
EER89493	Sorghum	cytosol	46.24	5.49
TraesCS7A01G192600.1	Wheat	cytosol	43.01	5.24
TraesCS7D01G193900.1	Wheat	cytosol	43.01	5.16
Os06t0235800-00	Rice	nucleus	44.09	5.12
HORVU7Hr1G039410.1	Barley	cytosol	43.01	5.03
HORVU5Hr1G069290.1	Barley	cytosol	41.94	4.99
TraesCS4B01G183500.1	Wheat	cytosol	37.63	4.53
CDY54766	Canola	nucleus	4.3	4.3
CDX86208	Canola	cytosol	9.68	4.29
TraesCS7B01G098000.1	Wheat	cytosol	31.18	3.62
CDY33383	Canola	cytosol	6.45	2.16
CDY48663	Canola	mitochondrion	2.15	1.59
Solyc03g044030.1.1	Tomato	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:CDY48662	EnsemblPlantsGene:GSBRNA2T00091527001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR11246	PANTHER:PTHR11246:SF5	ProteinID:CDY48662
ProteinID:CDY48662.1	SUPFAM:SSF48452	UniParc:UPI0004EDCCDF	UniProt:A0A078IF77	MapMan:35.2	:

Description

BnaC07g27470DBnaC07g27470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IF77]

Coordinates

chrLK032785:+:70537..71065

Molecular Weight (calculated)

11276.7 Da

IEP (calculated)

9.779

GRAVY (calculated)

-0.592

Length

93 amino acids

Sequence
(BLAST)

1: MFMYPHVKDI WVTYLTKFVK RYGNTKLERA RELFEHAISM APSDAVRTLY LHYAKLEEDY GLAKRAMKVY EEATKKSWRE AWEREIDLRL SVR

Best Arabidopsis Sequence Match ( AT5G28740.1 )
(BLAST)

001: MAISKDLYPS QEDLLYEEEL LRNQFSLKLW WRYLIAKAES PFKKRFIIYE RALKALPGSY KLWYAYLRER LDIVRNLPVT HPQYDSLNNT FERGLVTMHK
101: MPRIWVMYLQ TLTVQQLITR TRRTFDRALC ALPVTQHDRI WEPYLVFVSQ NGIPIETSLR VYRRYLMYDP SHIEEFIEFL VKSERWQESA ERLASVLNDD
201: KFYSIKGKTK HKLWLELCEL LVHHANVISG LNVDAIIRGG IRKFTDEVGM LWTSLADYYI RKNLLEKARD IYEEGMMKVV TVRDFSVIFD VYSRFEESTV
301: AKKMEMMSSS DEEDENEENG VEDDEEDVRL NFNLSVKELQ RKILNGFWLN DDNDVDLRLA RLEELMNRRP ALANSVLLRQ NPHNVEQWHR RVKIFEGNAA
401: KQILTYTEAV RTVDPMKAVG KPHTLWVAFA KLYENHKDLV NTRVIFDKAV QVNYKTVDHL ASVWCEWAEM ELRHKNFKGA LELMRRATAV PTVEVRRRVA
501: ADGNEPVQMK LHRSLRLWSF YVDLEESLGT LESTRAVYEK ILDLRIATPQ IIMNYAFLLE ENKYFEDAFK VYERGVKIFK YPHVKDIWVT YLTKFVKRYG
601: KTKLERAREL FEHAVSMAPS DAVRTLYLQY AKLEEDYGLA KRAMKVYEEA TKKVPEGQKL EMYEIYISRA AEIFGVPRTR EIYEQAIESG LPHKDVKIMC
701: IKFAELERSL GEIDRARALY KYSSQFADPR SDPEFWNKWH EFEVQHGNED TYREMLRIKR SVSASYSQTH FILPENMMQK DKLLDVEDAK GELKRAGLPE
801: DEMAALERQL LSTTTPTEPA KDGGRRVGFV SAGVISQSGE NEGKPVTGNG EDIELPDESD DESDGDDHVE ISQKEVPAAV FGGLARKRDE DGEEAGEDGA
901: AQKLGALERI KRQKLNQ

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LKU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.