Factsheet for Bra020619.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33886	Canola	cytosol	94.41	99.88
CDY05604	Canola	cytosol	93.1	98.95
AT5G28740.1	Thale cress	cytosol	91.68	91.28
Solyc03g044040.1.1	Tomato	cytosol	15.44	74.21
GSMUA_Achr9P04370_001	Banana	cytosol	61.77	70.94
Os07t0644300-02	Rice	nucleus	65.83	64.55
Zm00001d007043_P003	Maize	plastid	65.17	64.19
EER99801	Sorghum	cytosol, plastid	65.17	63.84
TraesCS2B01G167600.1	Wheat	cytosol	64.73	63.41
Zm00001d022335_P002	Maize	plasma membrane	64.73	63.28
HORVU2Hr1G025180.1	Barley	cytosol	64.51	63.27
TraesCS2D01G145800.1	Wheat	cytosol	64.62	63.24
TraesCS2A01G142400.1	Wheat	cytosol, nucleus	64.62	63.24
Bra010008.1-P	Field mustard	cytosol, nucleus, plastid	17.2	60.62
Bra032990.1-P	Field mustard	cytosol, nucleus, plastid	17.42	50.16
Bra027126.1-P	Field mustard	endoplasmic reticulum, golgi	7.45	44.16
EER89493	Sorghum	cytosol	33.63	39.21
Os06t0235800-00	Rice	nucleus	33.95	38.7
TraesCS7A01G192600.1	Wheat	cytosol	32.2	38.48
TraesCS4B01G183500.1	Wheat	cytosol	32.53	38.47
HORVU7Hr1G039410.1	Barley	cytosol	32.97	37.81
TraesCS7D01G193900.1	Wheat	cytosol	32.09	37.81
HORVU5Hr1G069290.1	Barley	cytosol	31.22	36.45
TraesCS7B01G098000.1	Wheat	cytosol	31.43	35.83
Solyc03g044030.1.1	Tomato	nucleus	13.25	33.52
Bra003036.1-P	Field mustard	nucleus	5.7	31.14
Os01t0686600-01	Rice	nucleus	12.92	29.8

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.4.5.2.5	EnsemblPlantsGene:Bra020619	EnsemblPlants:Bra020619.1	EnsemblPlants:Bra020619.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	InterPro:HAT	InterPro:IPR011990	InterPro:IPR013026	UniProt:M4DVS5
PFscan:PS50293	PANTHER:PTHR11246	PANTHER:PTHR11246:SF5	SMART:SM00386	SUPFAM:SSF48452	InterPro:TPR-contain_dom
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002546709	SEG:seg	:	:	:

Description

AT5G28740 (E=0.0) | transcription-coupled DNA repair protein-related

Coordinates

chrA02:-:24171702..24175014

Molecular Weight (calculated)

106518.0 Da

IEP (calculated)

6.125

GRAVY (calculated)

-0.512

Length

913 amino acids

Sequence
(BLAST)

001: MAISQDLYPS QEDLVYEEEI LRNPFSLKLW WRYLISKSDS PFKKRFVIYE RALKALPGSY KLWHAYLRER LEIVRNLPVT HPHYDSLNNT FERGLVTMHK
101: MPRIWVMYLQ TLTSQRLVTR TRRTFDRALC ALPVTQHERI WEPYLVFVGQ EGVPIETSLR VYRRYLMYDP SHIEEFIEFL LKSARWQEAA ERLAFVLNDD
201: QFYSIKGKTK HKLWMELCEL LVRHANEISG LNVDAIIRGG IRKFTDEVGM LWTSLADYYI RKNLLEKARD VYEEGMMKVV TVRDFSVIFD VYSRFEESTV
301: AKKMEMMSSS DEEEDEDVEE EEEEDVRLNF SLSVKELQRK ILNGFWLNDD NDVDLRLARL EELMNRRPAL ANSVLLRQNP HNVEQWHRRV KIFEGDAAKQ
401: ILTYTEAVRT VDPMKALGKP HTLWVAFAKL YEDHKDLVNT RVILDKAVQV NYKTVDHLAS VWCEWAEMEL RHKNFKGALE LMRRATAVPT VEVKRRVAAD
501: GNEPVQMKLH RSLRLWSFYV DLEESLGTLE STRAVYEKIL DLRIATPQII LNYAYLLEEN KYFEDAFKVY ERGVKIFKYP HVKDIWVTYL TKFVKRYGKA
601: KLERARELFE HAVSMAPSDA VRTLYLQYAK LEEDYGLAKR AMKVYEEATK KVPEGQRLEM YEIYISRAAE IFGVPRTREI YEQAIESGLP HKDVKIMCIK
701: FAELERSLGE IDRSRAVYKY ASQYADPRSD PEFWNKWHEF EVLHGNEDTY REMLRIKRSV SASYSQTHFI LPENMMQKDK IDVEEAKDEL KKAGLPDDEM
801: AALERQLMAA PMSTTVTSKD GGRRVGFVSA GVISQSGENA GKPVTGNGED IELPDEDESD GDDNVEIAQK EVPAAVFGGL ARKREEDGKE AEEDGAGKTL
901: GALERIKRQK LAQ

Best Arabidopsis Sequence Match ( AT5G28740.1 )
(BLAST)

001: MAISKDLYPS QEDLLYEEEL LRNQFSLKLW WRYLIAKAES PFKKRFIIYE RALKALPGSY KLWYAYLRER LDIVRNLPVT HPQYDSLNNT FERGLVTMHK
101: MPRIWVMYLQ TLTVQQLITR TRRTFDRALC ALPVTQHDRI WEPYLVFVSQ NGIPIETSLR VYRRYLMYDP SHIEEFIEFL VKSERWQESA ERLASVLNDD
201: KFYSIKGKTK HKLWLELCEL LVHHANVISG LNVDAIIRGG IRKFTDEVGM LWTSLADYYI RKNLLEKARD IYEEGMMKVV TVRDFSVIFD VYSRFEESTV
301: AKKMEMMSSS DEEDENEENG VEDDEEDVRL NFNLSVKELQ RKILNGFWLN DDNDVDLRLA RLEELMNRRP ALANSVLLRQ NPHNVEQWHR RVKIFEGNAA
401: KQILTYTEAV RTVDPMKAVG KPHTLWVAFA KLYENHKDLV NTRVIFDKAV QVNYKTVDHL ASVWCEWAEM ELRHKNFKGA LELMRRATAV PTVEVRRRVA
501: ADGNEPVQMK LHRSLRLWSF YVDLEESLGT LESTRAVYEK ILDLRIATPQ IIMNYAFLLE ENKYFEDAFK VYERGVKIFK YPHVKDIWVT YLTKFVKRYG
601: KTKLERAREL FEHAVSMAPS DAVRTLYLQY AKLEEDYGLA KRAMKVYEEA TKKVPEGQKL EMYEIYISRA AEIFGVPRTR EIYEQAIESG LPHKDVKIMC
701: IKFAELERSL GEIDRARALY KYSSQFADPR SDPEFWNKWH EFEVQHGNED TYREMLRIKR SVSASYSQTH FILPENMMQK DKLLDVEDAK GELKRAGLPE
801: DEMAALERQL LSTTTPTEPA KDGGRRVGFV SAGVISQSGE NEGKPVTGNG EDIELPDESD DESDGDDHVE ISQKEVPAAV FGGLARKRDE DGEEAGEDGA
901: AQKLGALERI KRQKLNQ

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LKU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.