Factsheet for Bra027126.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54766	Canola	nucleus	60.39	100.0
Bra010008.1-P	Field mustard	cytosol, nucleus, plastid	25.32	15.06
Bra032990.1-P	Field mustard	cytosol, nucleus, plastid	25.32	12.3
GSMUA_Achr9P04370_001	Banana	cytosol	41.56	8.05
Bra020619.1-P	Field mustard	cytosol	44.16	7.45
Solyc03g044040.1.1	Tomato	cytosol	9.09	7.37
Bra003036.1-P	Field mustard	nucleus	7.79	7.19
Os07t0644300-02	Rice	nucleus	42.21	6.98
Zm00001d007043_P003	Maize	plastid	41.56	6.9
Zm00001d022335_P002	Maize	plasma membrane	41.56	6.85
EER99801	Sorghum	cytosol, plastid	40.91	6.76
HORVU2Hr1G025180.1	Barley	cytosol	39.61	6.55
TraesCS2B01G167600.1	Wheat	cytosol	39.61	6.55
TraesCS2A01G142400.1	Wheat	cytosol, nucleus	39.61	6.54
TraesCS2D01G145800.1	Wheat	cytosol	39.61	6.54
Os01t0686600-01	Rice	nucleus	9.09	3.54
TraesCS7A01G192600.1	Wheat	cytosol	12.34	2.49
TraesCS7D01G193900.1	Wheat	cytosol	11.69	2.32
EER89493	Sorghum	cytosol	11.69	2.3
Os06t0235800-00	Rice	nucleus	11.69	2.25
TraesCS4B01G183500.1	Wheat	cytosol	11.04	2.2
HORVU7Hr1G039410.1	Barley	cytosol	11.04	2.14
TraesCS7B01G098000.1	Wheat	cytosol	11.04	2.12
HORVU5Hr1G069290.1	Barley	cytosol	10.39	2.05
Solyc03g044030.1.1	Tomato	nucleus	1.95	0.83

Protein Annotations

EnsemblPlants:Bra027126.1	EnsemblPlants:Bra027126.1-P	EnsemblPlantsGene:Bra027126	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf
PANTHER:PTHR11246	PANTHER:PTHR11246:SF5	SUPFAM:SSF48452	TMHMM:TMhelix	UniParc:UPI00025426C0	UniProt:M4EEB4
MapMan:35.2	:	:	:	:	:

Description

AT5G28740 (E=2e-028) | transcription-coupled DNA repair protein-related

Coordinates

chrA09:+:8666245..8666709

Molecular Weight (calculated)

17733.3 Da

IEP (calculated)

6.947

GRAVY (calculated)

-0.312

Length

154 amino acids

Sequence
(BLAST)

001: MRNDTKIVIK FLLFIVINYH IYVNHISNCI VRAAELFGVK ETGEIFKEAV ESSVVSENDV KMMCIMFAEM ERSVGEIDRA RGIYRYASQY EDSQVVWEKW
101: HELETEHGNE DTYRDILSVK QTVSGSGLRP VKKSRSGSPF ETLATSPVKK MRTM

Best Arabidopsis Sequence Match ( AT5G28740.1 )
(BLAST)

001: MAISKDLYPS QEDLLYEEEL LRNQFSLKLW WRYLIAKAES PFKKRFIIYE RALKALPGSY KLWYAYLRER LDIVRNLPVT HPQYDSLNNT FERGLVTMHK
101: MPRIWVMYLQ TLTVQQLITR TRRTFDRALC ALPVTQHDRI WEPYLVFVSQ NGIPIETSLR VYRRYLMYDP SHIEEFIEFL VKSERWQESA ERLASVLNDD
201: KFYSIKGKTK HKLWLELCEL LVHHANVISG LNVDAIIRGG IRKFTDEVGM LWTSLADYYI RKNLLEKARD IYEEGMMKVV TVRDFSVIFD VYSRFEESTV
301: AKKMEMMSSS DEEDENEENG VEDDEEDVRL NFNLSVKELQ RKILNGFWLN DDNDVDLRLA RLEELMNRRP ALANSVLLRQ NPHNVEQWHR RVKIFEGNAA
401: KQILTYTEAV RTVDPMKAVG KPHTLWVAFA KLYENHKDLV NTRVIFDKAV QVNYKTVDHL ASVWCEWAEM ELRHKNFKGA LELMRRATAV PTVEVRRRVA
501: ADGNEPVQMK LHRSLRLWSF YVDLEESLGT LESTRAVYEK ILDLRIATPQ IIMNYAFLLE ENKYFEDAFK VYERGVKIFK YPHVKDIWVT YLTKFVKRYG
601: KTKLERAREL FEHAVSMAPS DAVRTLYLQY AKLEEDYGLA KRAMKVYEEA TKKVPEGQKL EMYEIYISRA AEIFGVPRTR EIYEQAIESG LPHKDVKIMC
701: IKFAELERSL GEIDRARALY KYSSQFADPR SDPEFWNKWH EFEVQHGNED TYREMLRIKR SVSASYSQTH FILPENMMQK DKLLDVEDAK GELKRAGLPE
801: DEMAALERQL LSTTTPTEPA KDGGRRVGFV SAGVISQSGE NEGKPVTGNG EDIELPDESD DESDGDDHVE ISQKEVPAAV FGGLARKRDE DGEEAGEDGA
901: AQKLGALERI KRQKLNQ

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LKU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.