CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021844.1-P	Field mustard	nucleus	83.81	99.55
CDY23752	Canola	cytosol	98.1	98.1
CDY17165	Canola	cytosol	94.86	94.86
AT2G33340.1	Thale cress	cytosol	93.9	93.9
CDX89818	Canola	cytosol	82.86	83.33
CDY19484	Canola	plastid	94.29	81.28
CDY15510	Canola	plastid	83.62	79.82
CDY18239	Canola	endoplasmic reticulum, plastid	82.1	78.22
VIT_05s0049g01840.t01	Wine grape	cytosol	76.38	76.53
KRG90340	Soybean	nucleus	74.67	74.67
PGSC0003DMT400044280	Potato	cytosol	73.52	74.09
KRH33584	Soybean	nucleus	73.71	73.71
Solyc09g090660.2.1	Tomato	cytosol, nucleus	73.14	73.7
GSMUA_Achr11P...	Banana	cytosol	71.43	71.29
PGSC0003DMT400075431	Potato	cytosol	61.14	71.18
CDX86629	Canola	plastid	71.62	71.08
KXG38386	Sorghum	cytosol	70.48	70.34
TraesCS1B01G165900.2	Wheat	cytosol	70.48	70.21
Os10t0466300-01	Rice	nucleus	70.29	70.02
GSMUA_Achr8P12630_001	Banana	cytosol	69.9	69.77
HORVU1Hr1G039050.13	Barley	cytosol	70.1	69.7
TraesCS1A01G148000.1	Wheat	cytosol	70.48	69.55
TraesCS1D01G145900.2	Wheat	cytosol	70.29	69.36
TraesCS4B01G341300.1	Wheat	cytosol	68.0	68.0
TraesCS4D01G337200.1	Wheat	cytosol	68.38	67.61
TraesCS5A01G510600.1	Wheat	cytosol	68.0	67.23
HORVU4Hr1G083960.3	Barley	plastid	68.38	61.26
CDY49475	Canola	extracellular	10.67	53.33
CDY29722	Canola	mitochondrion	8.57	27.95

Protein Annotations

MapMan:16.4.5.1.4	Gene3D:2.130.10.10	Gene3D:3.30.40.10	GO:A0A078HJ81	UniProt:A0A078HJ81	EnsemblPlants:CDY37731
ProteinID:CDY37731	ProteinID:CDY37731.1	ncoils:Coil	GO:GO:0000398	GO:GO:0000974	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0061630	EnsemblPlantsGene:GSBRNA2T00064633001
InterPro:IPR001680	InterPro:IPR003613	InterPro:IPR013083	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400
PFAM:PF08606	PFscan:PS50082	PFscan:PS50294	PFscan:PS51698	PANTHER:PTHR43995	InterPro:Pre-mRNA_splic_Prp19
InterPro:Prp19	SMART:SM00320	SMART:SM00504	SUPFAM:SSF50978	SUPFAM:SSF57850	UniPathway:UPA00143
UniParc:UPI0004EDB155	InterPro:Ubox_domain	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

BnaA04g19370DBnaA04g19370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJ81]

Coordinates

chrLK032406:+:252130..256676

Molecular Weight (calculated)

56875.2 Da

IEP (calculated)

6.125

GRAVY (calculated)

-0.234

Length

525 amino acids

Sequence
(BLAST)

001: MNCAISGEVP EEPVVSTKSG LLFERRLIER HILDYGKCPV TGEPLTIDDI VPIKTGKVIK PKPVHTASIP GLLGTFQNEW DGLMLSNFAL EQQLHTARQE
101: LSHALYQHDS ACRVIARLKK ERDEARQLLA EVERHIPAAP EAVTANAALS NGKRAAGDEE MAPDAKKLCP GISAEIITEL TDCNAALSQK RKKRQIPETL
201: ASIDSLERFT QLSSHPLHKT NKPGICSMDI LHSKDVIATG GVDATAVIFD RPSGQILSTL TGHSKKVTSV KFVGDSDLVL TASADKTVRI WRDSGDRNYA
301: CGHTLNDHSA EVRAVTVHAT NKYFVSASLD STWCFYDLSS GLCLAKVSDD SEKVDYTAAA FHPDGLILGT GTSQSVVKIW DVKSQANVAK FDGHTGEVTS
401: ISFSENGYFL ATAAEDGVRL WDLRKLRNFK SFLSADANSV EFDPSGSYLG VAASDIRLYQ TASVKAEWNL IKTLPDLSGT GKATCVKFGP DAQYVAVGSM
501: DRNLRIFGLP GDQIPIADDD SAQDS

Best Arabidopsis Sequence Match ( AT2G33340.2 )
(BLAST)

001: MNCAISGEVP VEPVVSTKSG LLFERRLIER HISDYGKCPV TGEPLTIDDI VPIKTGEIIK PKTLHTASIP GLLGTFQNEW DGLMLSNFAL EQQLHTARQE
101: LSHALYQHDS ACRVIARLKK ERDEARQLLA EVERHIPAAP EAVTANAALS NGKRAAVDEE LGPDAKKLCP GISAEIITEL TDCNAALSQK RKKRQIPQTL
201: ASIDTLERFT QLSSHPLHKT NKPGICSMDI LHSKDVIATG GVDATAVLFD RPSGQILSTL TGHSKKVTSV KFVGDSDLVL TASADKTVRI WRNPGDGNYA
301: CGYTLNDHSA EVRAVTVHPT NKYFVSASLD GTWCFYDLSS GSCLAQVSDD SKNVDYTAAA FHPDGLILGT GTSQSVVKIW DVKSQANVAK FDGHTGEVTA
401: ISFSENGYFL ATAAEDGVRL WDLRKLRNFK SFLSADANSV EFDPSGSYLG IAASDIKVYQ TASVKAEWNL IKTLPDLSGT GKATCVKFGS DAQYVAVGSM
501: DRNLRIFGLP GDEKANVDDD SAQDS

Arabidopsis Description

PRP19BPre-mRNA-processing factor 19 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:O22785]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.