Factsheet for VIT_05s0049g01840.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_14s0036g00510.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04510.1	VIT_14s0036g00510.t01	AT1G09770.1	19629177

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90340	Soybean	nucleus	85.5	85.33
Solyc09g090660.2.1	Tomato	cytosol, nucleus	83.97	84.45
KRH33584	Soybean	nucleus	84.54	84.38
PGSC0003DMT400044280	Potato	cytosol	83.78	84.26
Zm00001d021987_P001	Maize	cytosol	8.97	81.03
PGSC0003DMT400075431	Potato	cytosol	68.32	79.38
Bra005504.1-P	Field mustard	cytosol	76.91	76.76
CDY17165	Canola	cytosol	76.91	76.76
CDY23752	Canola	cytosol	76.72	76.57
CDY37731	Canola	cytosol	76.53	76.38
AT2G33340.1	Thale cress	cytosol	76.34	76.19
KXG38386	Sorghum	cytosol	76.14	75.86
GSMUA_Achr11P...	Banana	cytosol	76.14	75.86
AT1G04510.1	Thale cress	cytosol	75.57	75.72
Bra021844.1-P	Field mustard	nucleus	63.74	75.57
GSMUA_Achr8P12630_001	Banana	cytosol	75.57	75.29
Os10t0466300-01	Rice	nucleus	75.38	74.95
TraesCS1B01G165900.2	Wheat	cytosol	74.81	74.38
CDX89818	Canola	cytosol	73.86	74.14
Bra015322.1-P	Field mustard	cytosol	73.86	74.14
TraesCS1A01G148000.1	Wheat	cytosol	74.81	73.68
HORVU1Hr1G039050.13	Barley	cytosol	74.24	73.67
TraesCS1D01G145900.2	Wheat	cytosol	74.62	73.5
TraesCS4B01G341300.1	Wheat	cytosol	72.71	72.57
TraesCS4D01G337200.1	Wheat	cytosol	72.52	71.56
TraesCS5A01G510600.1	Wheat	cytosol	72.33	71.37
CDY15510	Canola	plastid	74.05	70.55
CDY18239	Canola	endoplasmic reticulum, plastid	73.09	69.51
CDY19484	Canola	plastid	76.34	65.68
HORVU4Hr1G083960.3	Barley	plastid	72.52	64.85
Bra030575.1-P	Field mustard	cytosol	68.7	62.72
CDX86629	Canola	plastid	62.79	62.19
CDY49475	Canola	extracellular	9.92	49.52
CDY29722	Canola	mitochondrion	8.78	28.57

Protein Annotations

EntrezGene:100249408	wikigene:100249408	MapMan:16.4.5.1.4	Gene3D:2.130.10.10	Gene3D:3.30.40.10	ProteinID:CBI23714
ProteinID:CBI23714.3	ncoils:Coil	UniProt:D7SZN5	EMBL:FN595496	GO:GO:0000349	GO:GO:0000398
GO:GO:0000974	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0061630	GO:GO:0071006
InterPro:IPR001680	InterPro:IPR003613	InterPro:IPR013083	InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100249408
wikigene:LOC100249408	PFAM:PF00400	PFAM:PF08606	PFscan:PS50082	PFscan:PS50294	PFscan:PS51698
PANTHER:PTHR43995	InterPro:Pre-mRNA_splic_Prp19	InterPro:Prp19	SMART:SM00320	SMART:SM00504	SUPFAM:SSF50978
SUPFAM:SSF57850	TIGR:TC67504	UniParc:UPI000198355C	InterPro:Ubox_domain	ArrayExpress:VIT_05s0049g01840	EnsemblPlantsGene:VIT_05s0049g01840
EnsemblPlants:VIT_05s0049g01840.t01	unigene:Vvi.12312	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
RefSeq:XP_002285452	RefSeq:XP_002285452.1	InterPro:Znf_RING/FYVE/PHD	:	:	:

Description

No Description!

Coordinates

chr5:+:9290342..9306886

Molecular Weight (calculated)

57175.6 Da

IEP (calculated)

6.698

GRAVY (calculated)

-0.277

Length

524 amino acids

Sequence
(BLAST)

001: MNCSMSGEVP EEPVVSKKSG LLFEKRLIER HISDYGKCPI TGEPLTMDDI VPIQTGKIVK PRPVQAASIP GMLGMFQIEW DGLMLSNFAL EQQLHTARQE
101: LSHALYQHDA ACRVIARLKK ERDEARSLLA QSERQIPMSM STATAVNASA LSNGKRAAED EELGPNGKKL RPGISASIIT ELTDCNAALS QQRKKRQIPT
201: SLAPIDAVER YTQLSSYPLH KTNKPGILSA DIYYSKDIIA TGGVDANAVL FDRQSGQILS TLSGHSKKVT SVKFVTQDDL FLTASADKTV RVWQGSDNEN
301: YNCRHILKDH TAEVQAVTVH ATNNYFVTAS LDNTWCFYDL SSGLCLTQVA DASGSEGYTS AAFHPDGLIL GTGTSEALVK IWDVKSQANV ARFDGHVGAV
401: TAISFSENGY FLATAAHDGV KLWDLRKLRN FRTFTPYDSN TATNSVEFDH SGNYLAIAGS DIRVYQVANV KSEWNCIKTF PDLSGTGKAT CVKFGPDAKY
501: LAVGSMDRNL RIFGLPGDDG PMES

Best Arabidopsis Sequence Match ( AT2G33340.2 )
(BLAST)

001: MNCAISGEVP VEPVVSTKSG LLFERRLIER HISDYGKCPV TGEPLTIDDI VPIKTGEIIK PKTLHTASIP GLLGTFQNEW DGLMLSNFAL EQQLHTARQE
101: LSHALYQHDS ACRVIARLKK ERDEARQLLA EVERHIPAAP EAVTANAALS NGKRAAVDEE LGPDAKKLCP GISAEIITEL TDCNAALSQK RKKRQIPQTL
201: ASIDTLERFT QLSSHPLHKT NKPGICSMDI LHSKDVIATG GVDATAVLFD RPSGQILSTL TGHSKKVTSV KFVGDSDLVL TASADKTVRI WRNPGDGNYA
301: CGYTLNDHSA EVRAVTVHPT NKYFVSASLD GTWCFYDLSS GSCLAQVSDD SKNVDYTAAA FHPDGLILGT GTSQSVVKIW DVKSQANVAK FDGHTGEVTA
401: ISFSENGYFL ATAAEDGVRL WDLRKLRNFK SFLSADANSV EFDPSGSYLG IAASDIKVYQ TASVKAEWNL IKTLPDLSGT GKATCVKFGS DAQYVAVGSM
501: DRNLRIFGLP GDEKANVDDD SAQDS

Arabidopsis Description

PRP19BPre-mRNA-processing factor 19 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:O22785]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.