Factsheet for Zm00001d021987_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d042287_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04510.1	Zm00001d042287_P001	AT1G09770.1	19629177

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011008_P001	Maize	extracellular	100.0	35.58
Zm00001d017109_P001	Maize	cytosol	91.38	29.12
Zm00001d032763_P003	Maize	cytosol	94.83	10.46
Zm00001d014078_P001	Maize	cytosol	96.55	10.26
VIT_05s0049g01840.t01	Wine grape	cytosol	81.03	8.97
Bra021844.1-P	Field mustard	nucleus	67.24	8.82
PGSC0003DMT400044280	Potato	cytosol	77.59	8.64
Solyc09g090660.2.1	Tomato	cytosol, nucleus	75.86	8.45
Bra005504.1-P	Field mustard	cytosol	74.14	8.19
KRG90340	Soybean	nucleus	74.14	8.19
KRH33584	Soybean	nucleus	74.14	8.19
PGSC0003DMT400075431	Potato	cytosol	62.07	7.98
AT1G04510.1	Thale cress	cytosol	68.97	7.65
AT2G33340.1	Thale cress	cytosol	68.97	7.62
Bra015322.1-P	Field mustard	cytosol	65.52	7.28
Bra030575.1-P	Field mustard	cytosol	68.97	6.97
Zm00001d051091_P001	Maize	cytosol	3.45	1.9
CDY49475	Canola	extracellular	0.0	0.0
CDY29722	Canola	mitochondrion	0.0	0.0
Zm00001d015939_P001	Maize	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A1D6IIA7	GO:GO:0000398	GO:GO:0000974	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0061630	InterPro:IPR015943	ProteinID:ONM59220.1
PANTHER:PTHR43995	InterPro:Prp19	SUPFAM:SSF50978	UniParc:UPI00084406E6	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat_dom_sf
EnsemblPlantsGene:Zm00001d021987	EnsemblPlants:Zm00001d021987_P001	EnsemblPlants:Zm00001d021987_T001	:	:	:

Description

Pre-mRNA-processing factor 19 homolog 2

Coordinates

chr7:-:167554258..167555194

Molecular Weight (calculated)

6627.7 Da

IEP (calculated)

4.766

GRAVY (calculated)

-0.148

Length

58 amino acids

Sequence
(BLAST)

1: MSFSENGYFL ATAAHDGVKL WDLRKLRNFR TFSSYDLDTP TNTVEFDFSG NYLAIGLI

Best Arabidopsis Sequence Match ( AT2G33340.3 )
(BLAST)

001: MNCAISGEVP VEPVVSTKSG LLFERRLIER HISDYGKCPV TGEPLTIDDI VPIKTGEIIK PKTLHTASIP GLLGTFQNEW DGLMLSNFAL EQQLHTARQE
101: LSHALYQHDS ACRVIARLKK ERDEARQLLA EVERHIPAAP EAVTANAALS NGKRAAVDEE LGPDAKKLCP GISAEIITEL TDCNAALSQK RKKRQIPQTL
201: ASIDTLERFT QLSSHPLHKT NKPGICSMDI LHSKDVIATG GVDATAVLFD RPSGQILSTL TGHSKKVTSV KFVGDSDLVL TASADKTVRI WRNPGDGNYA
301: CGYTLNDHSA EVRAVTVHPT NKYFVSASLD GTWCFYDLSS GSCLAQVSDD SKNVDYTAAA FHPDGLILGT GTSQSVVKIW DVKSQANVAK FDGHTGEVTA
401: ISFSENGYFL ATAAEDGVRL WDLRKLRNFK SFLSADANSV EFDPSGSYLG IAASDIKVYQ TASVKAEWNL IKTLPDLSGT GKLRV

Arabidopsis Description

PRP19BPre-mRNA-processing factor 19 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:O22785]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.