Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra015322.1-P | Field mustard | cytosol | 91.4 | 91.57 |
CDX89818 | Canola | cytosol | 91.2 | 91.38 |
CDY15510 | Canola | plastid | 91.2 | 86.73 |
CDY18239 | Canola | endoplasmic reticulum, plastid | 90.44 | 85.84 |
AT2G33340.1 | Thale cress | cytosol | 83.37 | 83.05 |
Bra030575.1-P | Field mustard | cytosol | 84.51 | 77.0 |
CDX86629 | Canola | plastid | 76.86 | 75.99 |
VIT_05s0049g01840.t01 | Wine grape | cytosol | 75.72 | 75.57 |
KRG90340 | Soybean | nucleus | 74.38 | 74.1 |
PGSC0003DMT400044280 | Potato | cytosol | 73.61 | 73.9 |
Solyc09g090660.2.1 | Tomato | cytosol, nucleus | 73.23 | 73.51 |
KRH33584 | Soybean | nucleus | 73.61 | 73.33 |
GSMUA_Achr11P... | Banana | cytosol | 71.51 | 71.1 |
PGSC0003DMT400075431 | Potato | cytosol | 61.19 | 70.95 |
KXG38386 | Sorghum | cytosol | 71.32 | 70.91 |
TraesCS1B01G165900.2 | Wheat | cytosol | 71.13 | 70.59 |
HORVU1Hr1G039050.13 | Barley | cytosol | 70.94 | 70.27 |
TraesCS1A01G148000.1 | Wheat | cytosol | 71.13 | 69.92 |
TraesCS1D01G145900.2 | Wheat | cytosol | 70.94 | 69.74 |
Os10t0466300-01 | Rice | nucleus | 70.17 | 69.64 |
GSMUA_Achr8P12630_001 | Banana | cytosol | 69.98 | 69.58 |
Zm00001d021987_P001 | Maize | cytosol | 7.65 | 68.97 |
TraesCS4B01G341300.1 | Wheat | cytosol | 68.45 | 68.19 |
TraesCS4D01G337200.1 | Wheat | cytosol | 68.64 | 67.61 |
TraesCS5A01G510600.1 | Wheat | cytosol | 68.07 | 67.04 |
HORVU4Hr1G083960.3 | Barley | plastid | 68.07 | 60.75 |
Protein Annotations
MapMan:16.4.5.1.4 | Gene3D:2.130.10.10 | Gene3D:3.30.40.10 | EntrezGene:839503 | ProteinID:AAB70423.1 | ProteinID:AEE27707.1 |
EMBL:AK221436 | ArrayExpress:AT1G04510 | EnsemblPlantsGene:AT1G04510 | RefSeq:AT1G04510 | TAIR:AT1G04510 | RefSeq:AT1G04510-TAIR-G |
EnsemblPlants:AT1G04510.1 | TAIR:AT1G04510.1 | EMBL:AY039940 | EMBL:AY142564 | Unigene:At.21449 | ncoils:Coil |
GO:GO:0000349 | GO:GO:0000398 | GO:GO:0000974 | GO:GO:0002376 | GO:GO:0003674 | GO:GO:0003824 |
GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005634 | GO:GO:0005681 | GO:GO:0005730 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 |
GO:GO:0006397 | GO:GO:0006464 | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0006974 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009987 | GO:GO:0016043 |
GO:GO:0016567 | GO:GO:0016740 | GO:GO:0016874 | GO:GO:0019538 | GO:GO:0042742 | GO:GO:0045087 |
GO:GO:0046686 | GO:GO:0061630 | GO:GO:0070534 | GO:GO:0071006 | InterPro:IPR001680 | InterPro:IPR003613 |
InterPro:IPR013083 | InterPro:IPR015943 | InterPro:IPR017986 | Symbol:MAC3A | RefSeq:NP_563708.1 | PFAM:PF00400 |
PFAM:PF08606 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50082 | PFscan:PS50294 | PFscan:PS51698 |
PANTHER:PTHR43995 | InterPro:Pre-mRNA_splic_Prp19 | InterPro:Prp19 | UniProt:Q94BR4 | SMART:SM00320 | SMART:SM00504 |
SUPFAM:SSF50978 | SUPFAM:SSF57850 | UniParc:UPI00000ABF6A | InterPro:Ubox_domain | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | InterPro:Znf_RING/FYVE/PHD | : | : | : |
Description
PRP19APre-mRNA-processing factor 19 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94BR4]
Coordinates
chr1:+:1226483..1230947
Molecular Weight (calculated)
56869.1 Da
IEP (calculated)
6.614
GRAVY (calculated)
-0.308
Length
523 amino acids
Sequence
(BLAST)
(BLAST)
001: MNCAISGEVP EEPVVSKKSG LLYEKRLIQT HISDYGKCPV TGEPHTLDDI VPIKTGKIVK PKPLHTASIP GLLGTFQTEW DSLMLSNFAL EQQLHTARQE
101: LSHALYQHDA ACRVIARLKK ERDESRQLLA EAERQLPAAP EVATSNAALS NGKRGIDDGE QGPNAKKMRL GISAEVITEL TDCNAALSQQ RKKRQIPKTL
201: ASVDALEKFT QLSSHPLHKT NKPGIFSMDI LHSKDVIATG GIDTTAVLFD RPSGQILSTL TGHSKKVTSI KFVGDTDLVL TASSDKTVRI WGCSEDGNYT
301: SRHTLKDHSA EVRAVTVHAT NKYFVSASLD STWCFYDLSS GLCLAQVTDA SENDVNYTAA AFHPDGLILG TGTAQSIVKI WDVKSQANVA KFGGHNGEIT
401: SISFSENGYF LATAALDGVR LWDLRKLKNF RTFDFPDANS VEFDHSGSYL GIAASDIRVF QAASVKAEWN PIKTLPDLSG TGKATSVKFG LDSKYIAVGS
501: MDRNLRIFGL PDDDNTEDSA QDS
101: LSHALYQHDA ACRVIARLKK ERDESRQLLA EAERQLPAAP EVATSNAALS NGKRGIDDGE QGPNAKKMRL GISAEVITEL TDCNAALSQQ RKKRQIPKTL
201: ASVDALEKFT QLSSHPLHKT NKPGIFSMDI LHSKDVIATG GIDTTAVLFD RPSGQILSTL TGHSKKVTSI KFVGDTDLVL TASSDKTVRI WGCSEDGNYT
301: SRHTLKDHSA EVRAVTVHAT NKYFVSASLD STWCFYDLSS GLCLAQVTDA SENDVNYTAA AFHPDGLILG TGTAQSIVKI WDVKSQANVA KFGGHNGEIT
401: SISFSENGYF LATAALDGVR LWDLRKLKNF RTFDFPDANS VEFDHSGSYL GIAASDIRVF QAASVKAEWN PIKTLPDLSG TGKATSVKFG LDSKYIAVGS
501: MDRNLRIFGL PDDDNTEDSA QDS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.