Factsheet for HORVU4Hr1G083960.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G080010.3
HORVU5Hr1G108630.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04510.1	HORVU5Hr1G080010.3	AT1G09770.1	19629177
AT1G04510.1	HORVU5Hr1G108630.3	AT1G09770.1	19629177

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G341300.1	Wheat	cytosol	84.13	93.9
TraesCS4D01G337200.1	Wheat	cytosol	83.96	92.66
TraesCS5A01G510600.1	Wheat	cytosol	83.79	92.47
HORVU1Hr1G039050.13	Barley	cytosol	73.55	81.63
Os10t0466300-01	Rice	nucleus	73.21	81.4
GSMUA_Achr8P12630_001	Banana	cytosol	69.28	77.19
GSMUA_Achr11P...	Banana	cytosol	68.94	76.81
VIT_05s0049g01840.t01	Wine grape	cytosol	64.85	72.52
Solyc09g090660.2.1	Tomato	cytosol, nucleus	63.14	71.02
PGSC0003DMT400044280	Potato	cytosol	62.97	70.83
KRG90340	Soybean	nucleus	63.14	70.48
KRH33584	Soybean	nucleus	62.8	70.1
AT2G33340.1	Thale cress	cytosol	61.6	68.76
CDY37731	Canola	cytosol	61.26	68.38
CDY23752	Canola	cytosol	61.26	68.38
CDY17165	Canola	cytosol	61.26	68.38
Bra005504.1-P	Field mustard	cytosol	61.26	68.38
Bra021844.1-P	Field mustard	nucleus	51.54	68.33
AT1G04510.1	Thale cress	cytosol	60.75	68.07
CDX89818	Canola	cytosol	60.41	67.82
Bra015322.1-P	Field mustard	cytosol	60.41	67.82
PGSC0003DMT400075431	Potato	cytosol	52.05	67.63
CDY15510	Canola	plastid	61.09	65.09
CDY18239	Canola	endoplasmic reticulum, plastid	59.9	63.7
CDY19484	Canola	plastid	61.6	59.28
CDX86629	Canola	plastid	52.22	57.84
Bra030575.1-P	Field mustard	cytosol	55.8	56.97
CDY49475	Canola	extracellular	8.02	44.76
CDY29722	Canola	mitochondrion	7.34	26.71

Protein Annotations

MapMan:16.4.5.1.4	Gene3D:2.130.10.10	Gene3D:3.30.40.10	UniProt:A0A287PX42	ncoils:Coil	GO:GO:0000398
GO:GO:0000974	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006464	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0061630	EnsemblPlantsGene:HORVU4Hr1G083960	EnsemblPlants:HORVU4Hr1G083960.3	InterPro:IPR001680	InterPro:IPR003613	InterPro:IPR013083
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFAM:PF08606	PFscan:PS50082	PFscan:PS50294
PFscan:PS51698	PANTHER:PTHR43995	InterPro:Pre-mRNA_splic_Prp19	InterPro:Prp19	SMART:SM00320	SMART:SM00504
SUPFAM:SSF50978	SUPFAM:SSF57850	UniParc:UPI000B475917	InterPro:Ubox_domain	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr4H:-:627004064..627010259

Molecular Weight (calculated)

64061.3 Da

IEP (calculated)

7.410

GRAVY (calculated)

-0.336

Length

586 amino acids

Sequence
(BLAST)

001: CGSAHSSKGL AKFPGCLQQI PSPPPPRRCH HRCRRRRTRP LEVQPPADTT ALSAAMICAI SGEVPEDPVL STKSGLLFER RLIQRYIEDH GKCPVTKDDL
101: AMDDLVTVKT NKIPKPRPLQ AASVPGLLGM FQNEWDALML SNFALEQQLH TARQELSHAL YQHDAACRVI SRLKKERDES RTLLAQAERQ IPISAAGPAP
201: VAAVTIGKRA LEDEVSPDGK KIRPGINPVM IEELTECNSM LSAQRKKRQV PPSLAPIDAL ERYTQISSHP LHKTNKPGIL SIDIHHSKDI IATGGVDTNA
301: VLFDRPSGQV LCTLTDHSKK ITSLKFVLRD DLLITGSADK TVRLWQGNED GSYGCRHTMK DHVAEVEAVT VHASQKYFAT ASRDNTWCFY DISTGSCLTQ
401: VGEASGQDGY TSAAFHPDGL ILGTGTSEGV IKIWDVKSQT RVAKFEGEVG HVGTVTAISF SENGYFLATA ALDGVKLWDL RKLRNFRTLS PFDPDTPTSS
501: VEFDFSGSYI AVAGSDIRVY QVANVKTEWN LVKTLPDLSG TGKVTSVKFG ADAKYVAVGS MDHNLRVFGL PGDEQMEEAK PESAEQ

Best Arabidopsis Sequence Match ( AT1G04510.1 )
(BLAST)

001: MNCAISGEVP EEPVVSKKSG LLYEKRLIQT HISDYGKCPV TGEPHTLDDI VPIKTGKIVK PKPLHTASIP GLLGTFQTEW DSLMLSNFAL EQQLHTARQE
101: LSHALYQHDA ACRVIARLKK ERDESRQLLA EAERQLPAAP EVATSNAALS NGKRGIDDGE QGPNAKKMRL GISAEVITEL TDCNAALSQQ RKKRQIPKTL
201: ASVDALEKFT QLSSHPLHKT NKPGIFSMDI LHSKDVIATG GIDTTAVLFD RPSGQILSTL TGHSKKVTSI KFVGDTDLVL TASSDKTVRI WGCSEDGNYT
301: SRHTLKDHSA EVRAVTVHAT NKYFVSASLD STWCFYDLSS GLCLAQVTDA SENDVNYTAA AFHPDGLILG TGTAQSIVKI WDVKSQANVA KFGGHNGEIT
401: SISFSENGYF LATAALDGVR LWDLRKLKNF RTFDFPDANS VEFDHSGSYL GIAASDIRVF QAASVKAEWN PIKTLPDLSG TGKATSVKFG LDSKYIAVGS
501: MDRNLRIFGL PDDDNTEDSA QDS

Arabidopsis Description

PRP19APre-mRNA-processing factor 19 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94BR4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.