CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX93482
CDX94951
CDY20673
CDY31065
CDY47227
CDY53058

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04510.1	CDX93482	AT1G09770.1	19629177
AT1G04510.1	CDX94951	AT1G09770.1	19629177
AT1G04510.1	CDY20673	AT1G09770.1	19629177
AT1G04510.1	CDY31065	AT1G09770.1	19629177
AT1G04510.1	CDY47227	AT1G09770.1	19629177
AT1G04510.1	CDY53058	AT1G09770.1	19629177

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015322.1-P	Field mustard	cytosol	99.81	99.81
CDY18239	Canola	endoplasmic reticulum, plastid	97.7	92.56
AT1G04510.1	Thale cress	cytosol	91.38	91.2
CDY15510	Canola	plastid	94.64	89.82
CDY23752	Canola	cytosol	83.52	83.05
CDY37731	Canola	cytosol	83.33	82.86
CDY17165	Canola	cytosol	83.14	82.67
CDX86629	Canola	plastid	80.65	79.58
VIT_05s0049g01840.t01	Wine grape	cytosol	74.14	73.86
PGSC0003DMT400044280	Potato	cytosol	72.99	73.13
KRG90340	Soybean	nucleus	72.99	72.57
Solyc09g090660.2.1	Tomato	cytosol, nucleus	72.41	72.55
CDY19484	Canola	plastid	83.72	71.76
KRH33584	Soybean	nucleus	71.84	71.43
GSMUA_Achr11P...	Banana	cytosol	71.46	70.91
KXG38386	Sorghum	cytosol	71.26	70.72
Os10t0466300-01	Rice	nucleus	70.88	70.21
PGSC0003DMT400075431	Potato	cytosol	60.54	70.07
TraesCS1B01G165900.2	Wheat	cytosol	70.31	69.64
HORVU1Hr1G039050.13	Barley	cytosol	70.31	69.51
TraesCS1A01G148000.1	Wheat	cytosol	70.31	68.98
GSMUA_Achr8P12630_001	Banana	cytosol	69.35	68.82
TraesCS1D01G145900.2	Wheat	cytosol	70.11	68.8
TraesCS4B01G341300.1	Wheat	cytosol	68.2	67.81
TraesCS4D01G337200.1	Wheat	cytosol	68.39	67.23
TraesCS5A01G510600.1	Wheat	cytosol	68.01	66.86
HORVU4Hr1G083960.3	Barley	plastid	67.82	60.41
CDY49475	Canola	extracellular	11.88	59.05
CDY29722	Canola	mitochondrion	8.43	27.33

Protein Annotations

MapMan:16.4.5.1.4	Gene3D:2.130.10.10	Gene3D:3.30.40.10	GO:A0A078DRJ3	EnsemblPlants:CDX89818	ProteinID:CDX89818
ProteinID:CDX89818.1	ncoils:Coil	GO:GO:0000398	GO:GO:0000974	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0061630	EnsemblPlantsGene:GSBRNA2T00150271001	InterPro:IPR001680
InterPro:IPR003613	InterPro:IPR013083	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFAM:PF08606
PFscan:PS50082	PFscan:PS50294	PFscan:PS51698	PANTHER:PTHR43995	InterPro:Pre-mRNA_splic_Prp19	InterPro:Prp19
SMART:SM00320	SMART:SM00504	SUPFAM:SSF50978	SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EE7A0E
InterPro:Ubox_domain	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	InterPro:Znf_RING/FYVE/PHD

Description

BnaA10g02640D

Coordinates

chrLK031861:-:195946..200407

Molecular Weight (calculated)

56519.8 Da

IEP (calculated)

6.718

GRAVY (calculated)

-0.271

Length

522 amino acids

Sequence
(BLAST)

001: MNCAISGEVP VEPVVSKKSG LLYEKRLIET HISDFGKCPV TGEPHTIDDI VAVKTGKIVK PKPLHTASIP GLLGSFQTEW DGLMLSNFSL EQQLHTARQE
101: LSHALYQHDA ACRVIARLKK ERDEARQLLA EGERQLPAAP EVASENVTLS NGKRAADGGE QGPDAKKMRL GISGEVITEL TDCNAALSQQ RKKRQIPPTL
201: ASVDALEKFT QLSSHPLHKT SKPGIFSMDI LHSKDVIATG GIDTTAVLFD RPSGQILSTL TGHSKKVTSI KFVGDTDLVL TASSDKTVRI WGSSEDGSYA
301: CRHTLKDHSA EVRAVTVHAT NKYFVSASLD STWCFYDMSS GLCLAQVTDD SEKVDYTAAA FHPDGLILGT GTAQSIVKIW DVKSQANVAK FGGHTGEITS
401: VSFSENGYFL ATSALDGVRL WDLRKLKNFR TFEFPNANSV EFDHSGSYLG IAASDIRVFQ TASVKAEWNP VKTLPDLSGT GRATCVKFGP DAKYVAVGSM
501: DRNLRIFGLP SNDSTEDSAQ DS

Best Arabidopsis Sequence Match ( AT1G04510.1 )
(BLAST)

001: MNCAISGEVP EEPVVSKKSG LLYEKRLIQT HISDYGKCPV TGEPHTLDDI VPIKTGKIVK PKPLHTASIP GLLGTFQTEW DSLMLSNFAL EQQLHTARQE
101: LSHALYQHDA ACRVIARLKK ERDESRQLLA EAERQLPAAP EVATSNAALS NGKRGIDDGE QGPNAKKMRL GISAEVITEL TDCNAALSQQ RKKRQIPKTL
201: ASVDALEKFT QLSSHPLHKT NKPGIFSMDI LHSKDVIATG GIDTTAVLFD RPSGQILSTL TGHSKKVTSI KFVGDTDLVL TASSDKTVRI WGCSEDGNYT
301: SRHTLKDHSA EVRAVTVHAT NKYFVSASLD STWCFYDLSS GLCLAQVTDA SENDVNYTAA AFHPDGLILG TGTAQSIVKI WDVKSQANVA KFGGHNGEIT
401: SISFSENGYF LATAALDGVR LWDLRKLKNF RTFDFPDANS VEFDHSGSYL GIAASDIRVF QAASVKAEWN PIKTLPDLSG TGKATSVKFG LDSKYIAVGS
501: MDRNLRIFGL PDDDNTEDSA QDS

Arabidopsis Description

PRP19APre-mRNA-processing factor 19 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94BR4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.