CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86629
CDX89818
CDX90556
CDX92209
CDX95551
CDY09730
CDY15510
CDY18239
CDY18500
CDY24431
CDY24603

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09770.1	CDX86629	AT1G04510.1	19629177
AT1G09770.1	CDX89818	AT1G04510.1	19629177
AT1G09770.1	CDY15510	AT1G04510.1	19629177
AT1G09770.1	CDY18239	AT1G04510.1	19629177
AT1G09770.1	CDX92209	AT3G18165.1	17575050
AT1G09770.1	CDX95551	AT3G18165.1	17575050
AT1G09770.1	CDY18500	AT3G18165.1	17575050
AT1G09770.1	CDY24431	AT3G18165.1	17575050
AT1G09770.1	CDY24603	AT3G18165.1	17575050
AT1G09770.1	CDX90556	AT4G15900.1	17575050
AT1G09770.1	CDY09730	AT4G15900.1	17575050

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93482	Canola	nucleus	95.74	95.74
CDY31065	Canola	nucleus	92.9	92.68
CDY20673	Canola	nucleus	92.66	92.44
AT1G09770.1	Thale cress	nucleus	89.23	89.34
CDY47227	Canola	nucleus	23.55	84.32
CDY53058	Canola	nucleus	23.08	82.63
KRG92639	Soybean	nucleus	73.85	64.8
KRH34143	Soybean	nucleus	72.9	64.03
Zm00001d042287_P001	Maize	extracellular, nucleus, plasma membrane	69.82	63.78
PGSC0003DMT400029953	Potato	nucleus	71.12	60.95
Solyc04g009950.2.1	Tomato	nucleus	71.12	60.89
Os04t0348300-01	Rice	nucleus	69.94	60.8
KXG34025	Sorghum	nucleus	70.18	60.33
EES15997	Sorghum	nucleus	70.06	60.04
VIT_14s0036g00510.t01	Wine grape	nucleus	68.05	58.2
TraesCS5D01G460800.1	Wheat	nucleus	69.47	57.95
TraesCS5B01G459200.1	Wheat	nucleus	69.7	57.58
TraesCS5A01G450800.1	Wheat	nucleus	69.35	57.12
HORVU5Hr1G108630.3	Barley	nucleus	69.7	55.67
TraesCS5D01G314000.1	Wheat	nucleus	69.35	55.34
HORVU5Hr1G080010.3	Barley	nucleus	69.82	55.14
TraesCS5A01G307100.1	Wheat	nucleus	69.47	54.3
TraesCS5B01G307500.2	Wheat	nucleus	69.59	54.24
GSMUA_Achr9P23340_001	Banana	nucleus	70.18	52.62
CDY53404	Canola	nucleus	4.38	27.61

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	MapMan:15.5.2.2	MapMan:16.4.5.1.2	GO:A0A078E0H7	EnsemblPlants:CDX94951
ProteinID:CDX94951	ProteinID:CDX94951.1	InterPro:Cdc5p/Cef1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00100435001	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
PFAM:PF11831	PFAM:PF13921	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF559	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0004EEF951	SEG:seg	:	:

Description

BnaC05g07200D

Coordinates

chrLK031886:-:323581..327013

Molecular Weight (calculated)

95742.8 Da

IEP (calculated)

6.714

GRAVY (calculated)

-0.928

Length

845 amino acids

Sequence
(BLAST)

001: MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT EWTREEDEKL LHLAKLLPTQ WRTIAPIVGR TPSQCLERYE
101: KLLDAACTKD ENYEAADDPR KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR LASLQKRREL KAAGIGNSHR
201: KRKRKGIDYN AEIPFEKRAP AGFYDTADED RPADQVKFPT TIEDLEGKRR ADVEAQLRKQ DVARNKIAER RDAPAAILQA NKLNDPEAVR KRSKLMLPPP
301: QISDHELEEI AKMGYASDLL AGNEEMTEGS AATRALLANY SQTPRQGMTP MRTPQRTPAG KGDAIMMEAE NLARLRDSQT PLLGGDNPEL HPSDFTGVTP
401: RKKEMLTPNP MLTPSMTPGG ASLTPRIGLT PSREGSSFAM TPRGTPFRDE LHINEDMDMH ESAKLEKQRR EEARMSLRSG LTGLPQPKNE YQIVAQPPPE
501: ESEEPEEKIE EDMSDRIARE KAEEEARYQA LLRKRSKVLQ RDLPRPPAAS LELIRNSLLS ANRDKSSVVP PSPVDDADEM VRKELLQLLE HDNAKYPLDE
601: KAEKKKGAKN RANSSGSQVT AIEDFEENEI QEADKMIKEE AQYLCAAMGN ESKTFDEFVV AHDDCVKEIM YFPTRNAYGP SSVAVKAEKK VAALQVEMEN
701: AKKKMEEDEK KAEHMKAKYK TYTKGHEKRA ETVWSQIEAS LKQIEIGGTE VECFKALKRQ EEMAASFRKK NLEEEVVKQK ETERRLQARY GELLSTLEKA
801: EELMVGFRAQ ALKQADVVED SLKQKEAKLA TGEEEVEAIS MEASA

Best Arabidopsis Sequence Match ( AT1G09770.1 )
(BLAST)

001: MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT EWTREEDEKL LHLAKLLPTQ WRTIAPIVGR TPSQCLERYE
101: KLLDAACTKD ENYDAADDPR KLRPGEIDPN PEAKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR LASLQKRREL KAAGIDGRHR
201: KRKRKGIDYN AEIPFEKRAP AGFYDTADED RPADQVKFPT TIEELEGKRR ADVEAHLRKQ DVARNKIAQR QDAPAAILQA NKLNDPEVVR KRSKLMLPPP
301: QISDHELEEI AKMGYASDLL AENEELTEGS AATRALLANY SQTPRQGMTP MRTPQRTPAG KGDAIMMEAE NLARLRDSQT PLLGGENPEL HPSDFTGVTP
401: RKKEIQTPNP MLTPSMTPGG AGLTPRIGLT PSRDGSSFSM TPKGTPFRDE LHINEDMDMH ESAKLERQRR EEARRSLRSG LTGLPQPKNE YQIVAQPPPE
501: ESEEPEEKIE EDMSDRIARE KAEEEARQQA LLKKRSKVLQ RDLPRPPAAS LAVIRNSLLS ADGDKSSVVP PTPIEVADKM VREELLQLLE HDNAKYPLDD
601: KAEKKKGAKN RTNRSASQVL AIDDFDENEL QEADKMIKEE GKFLCVSMGH ENKTLDDFVE AHNTCVNDLM YFPTRSAYEL SSVAGNADKV AAFQEEMENV
701: RKKMEEDEKK AEHMKAKYKT YTKGHERRAE TVWTQIEATL KQAEIGGTEV ECFKALKRQE EMAASFRKKN LQEEVIKQKE TESKLQTRYG NMLAMVEKAE
801: EIMVGFRAQA LKKQEDVEDS HKLKEAKLAT GEEEDIAIAM EASA

Arabidopsis Description

CDC5Cell division cycle 5-like protein [Source:UniProtKB/Swiss-Prot;Acc:P92948]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.