Factsheet for Solyc04g009950.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g119010.2.1
Solyc09g010620.1.1
Solyc09g090660.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09770.1	Solyc09g090660.2.1	AT1G04510.1	19629177
AT1G09770.1	Solyc03g119010.2.1	AT3G18165.1	17575050
AT1G09770.1	Solyc09g010620.1.1	AT4G15900.1	17575050

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029953	Potato	nucleus	87.64	87.73
CDY47227	Canola	nucleus	18.95	79.24
Bra027160.1-P	Field mustard	nucleus	18.74	78.39
CDY53058	Canola	nucleus	18.64	77.97
AT1G09770.1	Thale cress	nucleus	61.09	71.45
Bra019993.1-P	Field mustard	nucleus	60.99	71.33
CDX93482	Canola	nucleus	60.89	71.12
CDX94951	Canola	nucleus	60.89	71.12
CDY31065	Canola	nucleus	60.79	70.84
Bra030798.1-P	Field mustard	nucleus	60.38	70.37
CDY20673	Canola	nucleus	59.68	69.54
KRG92639	Soybean	nucleus	67.17	68.85
KRH34143	Soybean	nucleus	66.77	68.5
Zm00001d042287_P001	Maize	extracellular, nucleus, plasma membrane	61.7	65.84
VIT_14s0036g00510.t01	Wine grape	nucleus	64.84	64.78
Os04t0348300-01	Rice	nucleus	63.42	64.4
EES15997	Sorghum	nucleus	63.02	63.08
KXG34025	Sorghum	nucleus	62.72	62.97
TraesCS5D01G460800.1	Wheat	nucleus	62.21	60.61
TraesCS5B01G459200.1	Wheat	nucleus	62.41	60.22
TraesCS5A01G450800.1	Wheat	nucleus	62.01	59.65
HORVU5Hr1G108630.3	Barley	nucleus	62.51	58.32
TraesCS5D01G314000.1	Wheat	nucleus	61.6	57.41
HORVU5Hr1G080010.3	Barley	nucleus	61.9	57.1
GSMUA_Achr9P23340_001	Banana	nucleus	65.05	56.97
TraesCS5B01G307500.2	Wheat	nucleus	62.01	56.46
TraesCS5A01G307100.1	Wheat	nucleus	61.7	56.34

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	MapMan:15.5.2.2	MapMan:16.4.5.1.2	InterPro:Cdc5p/Cef1	ncoils:Coil
GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006139	GO:GO:0006357	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009605	GO:GO:0009607
GO:GO:0009870	GO:GO:0009987	GO:GO:0010204	GO:GO:0030154	GO:GO:0042742	GO:GO:0043565
GO:GO:0044212	GO:GO:0050832	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:K4BPF0	InterPro:Myb_dom
PFAM:PF11831	PFAM:PF13921	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF559	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc04g009950.2	EnsemblPlants:Solyc04g009950.2.1	UniParc:UPI0002765C17	SEG:seg

Description

No Description!

Coordinates

chr4:+:3261269..3266696

Molecular Weight (calculated)

111177.0 Da

IEP (calculated)

5.120

GRAVY (calculated)

-0.929

Length

987 amino acids

Sequence
(BLAST)

001: MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE
101: KLLDAACTKD ENYDPNDDPR KLKPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR LASLQKRREL KAAGIDVRQR
201: KRKRRGIDYN AEIPFEKKPP PGFYDVTEED RPVDQPKFPT TIEELEGERR VDKEARLRKQ DIARNKIAER QDAPTSILHA NKLNDPEAVR KRSKLNLPAP
301: QIPDHELEAI AKIGIASDLI GGDELSEGNA ATRALLANYA QTPQHAMTPM RTPQRTPSTK QDAIMMEAEN QRRLTQSQTP LLGGDNPLLH PSDFSGVTPK
401: KREVQTPNPL LTPSATPGAT SLTPRIGMTP SRDSYGMTPK GTPMRDELRI NEEMDMHSNA KLGQFNSKKE LLSGLKSLPQ PKNEYQIVIQ QPPEENEEPE
501: EKIEEDMSDR IAREKAEEEA KRQALLRKRS KVLQRELPRP PIASLELIKS SLMRADEDKS SFVPPTLIEQ ADEMIRKELV SLLEHDNTKY PLDEKPEKEK
601: KKGVKRKIVA EPAIEDFEED ELKEADGLIK DEAHFLRVAM GHESESLDEF VEIHKATLND IMYFPTRNAY GLSSVAGNME KLAALQNEFE NVKKKMDDDT
701: KKATKLEQKI KVLTNGYQMR AGKLWSQIES TFKKMDTAGT ELECFRALQK QEQLAASHRI NNMWEEVQKQ KELERTLQKR YGDLIADTQK IQHLMDEYRI
801: QDQMQEEVAA KNRALELAKA EMAEKDSVPS ADDVEPSGTG QNSNTEENSA SASHVPIEAD VHVEPSGTNQ CSNAEENSAS IEADNVHVEP SGTSQCPIAE
901: ETSASISHDT TPRDVDGQVQ VADVSTMDSE AISDHVPMEG QQNPGEESNT VVTKTEDSTV AAGDVDVTKT DDSGVVAGDG EADPKNM

Best Arabidopsis Sequence Match ( AT1G09770.1 )
(BLAST)

001: MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT EWTREEDEKL LHLAKLLPTQ WRTIAPIVGR TPSQCLERYE
101: KLLDAACTKD ENYDAADDPR KLRPGEIDPN PEAKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR LASLQKRREL KAAGIDGRHR
201: KRKRKGIDYN AEIPFEKRAP AGFYDTADED RPADQVKFPT TIEELEGKRR ADVEAHLRKQ DVARNKIAQR QDAPAAILQA NKLNDPEVVR KRSKLMLPPP
301: QISDHELEEI AKMGYASDLL AENEELTEGS AATRALLANY SQTPRQGMTP MRTPQRTPAG KGDAIMMEAE NLARLRDSQT PLLGGENPEL HPSDFTGVTP
401: RKKEIQTPNP MLTPSMTPGG AGLTPRIGLT PSRDGSSFSM TPKGTPFRDE LHINEDMDMH ESAKLERQRR EEARRSLRSG LTGLPQPKNE YQIVAQPPPE
501: ESEEPEEKIE EDMSDRIARE KAEEEARQQA LLKKRSKVLQ RDLPRPPAAS LAVIRNSLLS ADGDKSSVVP PTPIEVADKM VREELLQLLE HDNAKYPLDD
601: KAEKKKGAKN RTNRSASQVL AIDDFDENEL QEADKMIKEE GKFLCVSMGH ENKTLDDFVE AHNTCVNDLM YFPTRSAYEL SSVAGNADKV AAFQEEMENV
701: RKKMEEDEKK AEHMKAKYKT YTKGHERRAE TVWTQIEATL KQAEIGGTEV ECFKALKRQE EMAASFRKKN LQEEVIKQKE TESKLQTRYG NMLAMVEKAE
801: EIMVGFRAQA LKKQEDVEDS HKLKEAKLAT GEEEDIAIAM EASA

Arabidopsis Description

CDC5Cell division cycle 5-like protein [Source:UniProtKB/Swiss-Prot;Acc:P92948]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.