Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G09770.1 | KXG38386 | AT1G04510.1 | 19629177 |
| AT1G09770.1 | EES00531 | AT3G18165.1 | 17575050 |
| AT1G09770.1 | KXG25821 | AT4G15900.1 | 17575050 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG34025 | Sorghum | nucleus | 93.2 | 93.49 |
| Zm00001d042287_P001 | Maize | extracellular, nucleus, plasma membrane | 85.5 | 91.14 |
| Os04t0348300-01 | Rice | nucleus | 82.76 | 83.95 |
| CDY47227 | Canola | nucleus | 19.57 | 81.78 |
| TraesCS5D01G460800.1 | Wheat | nucleus | 83.47 | 81.24 |
| TraesCS5B01G459200.1 | Wheat | nucleus | 83.77 | 80.74 |
| TraesCS5A01G450800.1 | Wheat | nucleus | 83.98 | 80.7 |
| Bra027160.1-P | Field mustard | nucleus | 19.27 | 80.51 |
| CDY53058 | Canola | nucleus | 19.17 | 80.08 |
| TraesCS5D01G314000.1 | Wheat | nucleus | 83.87 | 78.09 |
| HORVU5Hr1G108630.3 | Barley | nucleus | 83.67 | 77.98 |
| HORVU5Hr1G080010.3 | Barley | nucleus | 84.08 | 77.48 |
| TraesCS5B01G307500.2 | Wheat | nucleus | 84.08 | 76.48 |
| TraesCS5A01G307100.1 | Wheat | nucleus | 83.67 | 76.32 |
| Bra019993.1-P | Field mustard | nucleus | 60.45 | 70.62 |
| AT1G09770.1 | Thale cress | nucleus | 60.34 | 70.5 |
| CDX93482 | Canola | nucleus | 60.24 | 70.3 |
| CDY31065 | Canola | nucleus | 60.34 | 70.25 |
| Bra030798.1-P | Field mustard | nucleus | 60.34 | 70.25 |
| CDX94951 | Canola | nucleus | 60.04 | 70.06 |
| CDY20673 | Canola | nucleus | 59.94 | 69.78 |
| KRG92639 | Soybean | nucleus | 64.0 | 65.52 |
| KRH34143 | Soybean | nucleus | 63.89 | 65.49 |
| Solyc04g009950.2.1 | Tomato | nucleus | 63.08 | 63.02 |
| PGSC0003DMT400029953 | Potato | nucleus | 62.68 | 62.68 |
| VIT_14s0036g00510.t01 | Wine grape | nucleus | 61.97 | 61.84 |
| GSMUA_Achr9P23340_001 | Banana | nucleus | 70.39 | 61.58 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | MapMan:15.5.2.2 | MapMan:16.4.5.1.2 | EntrezGene:8063283 | UniProt:C5YNT7 |
| InterPro:Cdc5p/Cef1 | ncoils:Coil | EnsemblPlants:EES15997 | ProteinID:EES15997 | ProteinID:EES15997.1 | GO:GO:0000981 |
| GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006357 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 |
| GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF11831 | PFAM:PF13921 |
| PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF559 | InterPro:SANT/Myb | SMART:SM00717 | EnsemblPlantsGene:SORBI_3008G100100 |
| SUPFAM:SSF46689 | unigene:Sbi.9476 | UniParc:UPI0001A882CB | RefSeq:XP_002442159.1 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr8:+:47545504..47560332
Molecular Weight (calculated)
110858.0 Da
IEP (calculated)
4.843
GRAVY (calculated)
-0.945
Length
986 amino acids
Sequence
(BLAST)
(BLAST)
001: MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE
101: KLLDAACAKD ENYEANDDPR KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR LASLQKRREL KAAGIDTRHR
201: KRKRKGIDYN AEIPFEKRPP PGFYDTVGED RPLEHVQFPT TIEELEGKRR ADIEAQLRKQ DIARNKILQR QDAPAAIMQA NKLNDPEAVT KRSKLMLPPP
301: QISDHELEEI AKMGSAGDPA LADELGEGST ATRTLLASYS QTPRLGMTPL RTPQRTPAGK GDAIMMEAEN LARLRESQTP LLGGDNPELH PSDFSGVTPR
401: KEIQTPNPMA TPLASPGPGV TPRIGMTPSR EGHSFGLTPR GTPFRDELRI NEEVEMQDST KLELRRQAEL KKSLRSGFAS IPQPRNEYQI VMPPITEDEA
501: EEAEEKIEED MSDRLARERA EEQARQEALL RKRSKVLQRS LPRPPAASVE IIRQSLIRSG ESRSRSTFVP PTSLEQADEL INEELLRLLE HDNAKYPLDE
601: KTQKEKKKGK RQQNGGALVP EIDDFDEDEL KEASSMVEEE IQYLRVAMGH ENESFEDFVK AHDACQEDLM FFPTNNSYGL ASVAGNADKI SALQNEFETV
701: KKRMDDEAKK ASRLEQKIKL LTQGYQVRAG KLWSQVQDTF KQMDTAATEL ECFQELQKQE HLAASYRILN LTEEVNKQKA LERTLQSRYG ELVSGFQRIQ
801: EQLEEHKKQL KVQEAIEAEN RAQEEEVVAP NHAAVEEEDE RKPLSSDEKS QQTNRATDEE AAGSKAITKD QMDVDSGNVD GGFVGPIPPA PDTEGDNDEV
901: SVQDNTSNTE SSECASTNDG ADKIDQAKLE GQDKADDSMA ADAGPQEGKD ELAPVGASIS EENTTISLDQ AVSKEDEGSA PERSIV
101: KLLDAACAKD ENYEANDDPR KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR LASLQKRREL KAAGIDTRHR
201: KRKRKGIDYN AEIPFEKRPP PGFYDTVGED RPLEHVQFPT TIEELEGKRR ADIEAQLRKQ DIARNKILQR QDAPAAIMQA NKLNDPEAVT KRSKLMLPPP
301: QISDHELEEI AKMGSAGDPA LADELGEGST ATRTLLASYS QTPRLGMTPL RTPQRTPAGK GDAIMMEAEN LARLRESQTP LLGGDNPELH PSDFSGVTPR
401: KEIQTPNPMA TPLASPGPGV TPRIGMTPSR EGHSFGLTPR GTPFRDELRI NEEVEMQDST KLELRRQAEL KKSLRSGFAS IPQPRNEYQI VMPPITEDEA
501: EEAEEKIEED MSDRLARERA EEQARQEALL RKRSKVLQRS LPRPPAASVE IIRQSLIRSG ESRSRSTFVP PTSLEQADEL INEELLRLLE HDNAKYPLDE
601: KTQKEKKKGK RQQNGGALVP EIDDFDEDEL KEASSMVEEE IQYLRVAMGH ENESFEDFVK AHDACQEDLM FFPTNNSYGL ASVAGNADKI SALQNEFETV
701: KKRMDDEAKK ASRLEQKIKL LTQGYQVRAG KLWSQVQDTF KQMDTAATEL ECFQELQKQE HLAASYRILN LTEEVNKQKA LERTLQSRYG ELVSGFQRIQ
801: EQLEEHKKQL KVQEAIEAEN RAQEEEVVAP NHAAVEEEDE RKPLSSDEKS QQTNRATDEE AAGSKAITKD QMDVDSGNVD GGFVGPIPPA PDTEGDNDEV
901: SVQDNTSNTE SSECASTNDG ADKIDQAKLE GQDKADDSMA ADAGPQEGKD ELAPVGASIS EENTTISLDQ AVSKEDEGSA PERSIV
001: MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT EWTREEDEKL LHLAKLLPTQ WRTIAPIVGR TPSQCLERYE
101: KLLDAACTKD ENYDAADDPR KLRPGEIDPN PEAKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR LASLQKRREL KAAGIDGRHR
201: KRKRKGIDYN AEIPFEKRAP AGFYDTADED RPADQVKFPT TIEELEGKRR ADVEAHLRKQ DVARNKIAQR QDAPAAILQA NKLNDPEVVR KRSKLMLPPP
301: QISDHELEEI AKMGYASDLL AENEELTEGS AATRALLANY SQTPRQGMTP MRTPQRTPAG KGDAIMMEAE NLARLRDSQT PLLGGENPEL HPSDFTGVTP
401: RKKEIQTPNP MLTPSMTPGG AGLTPRIGLT PSRDGSSFSM TPKGTPFRDE LHINEDMDMH ESAKLERQRR EEARRSLRSG LTGLPQPKNE YQIVAQPPPE
501: ESEEPEEKIE EDMSDRIARE KAEEEARQQA LLKKRSKVLQ RDLPRPPAAS LAVIRNSLLS ADGDKSSVVP PTPIEVADKM VREELLQLLE HDNAKYPLDD
601: KAEKKKGAKN RTNRSASQVL AIDDFDENEL QEADKMIKEE GKFLCVSMGH ENKTLDDFVE AHNTCVNDLM YFPTRSAYEL SSVAGNADKV AAFQEEMENV
701: RKKMEEDEKK AEHMKAKYKT YTKGHERRAE TVWTQIEATL KQAEIGGTEV ECFKALKRQE EMAASFRKKN LQEEVIKQKE TESKLQTRYG NMLAMVEKAE
801: EIMVGFRAQA LKKQEDVEDS HKLKEAKLAT GEEEDIAIAM EASA
101: KLLDAACTKD ENYDAADDPR KLRPGEIDPN PEAKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR LASLQKRREL KAAGIDGRHR
201: KRKRKGIDYN AEIPFEKRAP AGFYDTADED RPADQVKFPT TIEELEGKRR ADVEAHLRKQ DVARNKIAQR QDAPAAILQA NKLNDPEVVR KRSKLMLPPP
301: QISDHELEEI AKMGYASDLL AENEELTEGS AATRALLANY SQTPRQGMTP MRTPQRTPAG KGDAIMMEAE NLARLRDSQT PLLGGENPEL HPSDFTGVTP
401: RKKEIQTPNP MLTPSMTPGG AGLTPRIGLT PSRDGSSFSM TPKGTPFRDE LHINEDMDMH ESAKLERQRR EEARRSLRSG LTGLPQPKNE YQIVAQPPPE
501: ESEEPEEKIE EDMSDRIARE KAEEEARQQA LLKKRSKVLQ RDLPRPPAAS LAVIRNSLLS ADGDKSSVVP PTPIEVADKM VREELLQLLE HDNAKYPLDD
601: KAEKKKGAKN RTNRSASQVL AIDDFDENEL QEADKMIKEE GKFLCVSMGH ENKTLDDFVE AHNTCVNDLM YFPTRSAYEL SSVAGNADKV AAFQEEMENV
701: RKKMEEDEKK AEHMKAKYKT YTKGHERRAE TVWTQIEATL KQAEIGGTEV ECFKALKRQE EMAASFRKKN LQEEVIKQKE TESKLQTRYG NMLAMVEKAE
801: EIMVGFRAQA LKKQEDVEDS HKLKEAKLAT GEEEDIAIAM EASA
Arabidopsis Description
CDC5Cell division cycle 5-like protein [Source:UniProtKB/Swiss-Prot;Acc:P92948]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.